Mercurial > repos > peterjc > mira_assembler
comparison tools/mira3/mira.xml @ 23:83a94a5038a7 draft
planemo upload for repository https://github.com/peterjc/galaxy_mira/tree/master/tools/mira3/ commit fd979d17340cde155de176604744831d9597c6b6
| author | peterjc |
|---|---|
| date | Thu, 18 May 2017 13:35:41 -0400 |
| parents | f74bc0420db4 |
| children | 56dede4f0735 |
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| 22:a5a3460fafa6 | 23:83a94a5038a7 |
|---|---|
| 1 <tool id="mira_assembler" name="Assemble with MIRA v3.4" version="0.0.11"> | 1 <tool id="mira_assembler" name="Assemble with MIRA v3.4" version="0.0.12"> |
| 2 <description>Takes Sanger, Roche, Illumina, and Ion Torrent data</description> | 2 <description>Takes Sanger, Roche, Illumina, and Ion Torrent data</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="binary">mira</requirement> | |
| 5 <requirement type="package" version="3.4.1.1">MIRA</requirement> | 4 <requirement type="package" version="3.4.1.1">MIRA</requirement> |
| 6 </requirements> | 5 </requirements> |
| 7 <version_command interpreter="python">mira.py -v</version_command> | 6 <version_command> |
| 8 <command interpreter="python">mira.py mira $out_fasta $out_qual $out_ace $out_caf $out_wig $out_log | 7 python $__tool_directory__/mira.py -v |
| 8 </version_command> | |
| 9 <command detect_errors="aggressive"> | |
| 10 python $__tool_directory__/mira.py mira '$out_fasta' '$out_qual' '$out_ace' '$out_caf' '$out_wig' '$out_log' | |
| 9 ##Give the wrapper script list of output filenames, then the mira command... | 11 ##Give the wrapper script list of output filenames, then the mira command... |
| 10 mira --job=$job_method,$job_type,$job_quality | 12 mira --job=$job_method,$job_type,$job_quality |
| 11 | 13 |
| 12 ##Input files | 14 ##Input files |
| 13 #if $condBackbone.use == "true": | 15 #if $condBackbone.use == "true": |