Mercurial > repos > peterjc > mira4_assembler
view tools/mira4/tool_dependencies.xml @ 12:a6a56440567c draft
Uploaded v0.0.2 preview 4, now using MIRA 4.0 (not RC), and sets MIRA4 environment variable during install.
author | peterjc |
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date | Mon, 03 Feb 2014 06:25:35 -0500 |
parents | 02350bef2e99 |
children | b0ffe0e7282b |
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<?xml version="1.0"?> <tool_dependency> <package name="samtools" version="0.1.19"> <repository changeset_revision="54195f1d4b0f" name="package_samtools_0_1_19" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="MIRA" version="4.0"> <install version="1.0"> <actions_group> <!-- Download the binaries for MIRA compatible with 64-bit OSX. --> <actions architecture="x86_64" os="darwin"> <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_4.0_darwin13.0.0_x86_64_static.tar.bz2</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> <!-- Download the binaries for MIRA compatible with 64-bit Linux. --> <actions architecture="x86_64" os="linux"> <action type="download_by_url">https://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_4.0_linux-gnu_x86_64_static.tar.bz2</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> <actions> <action type="shell_command">echo ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported.</action> <action type="shell_command">echo Your machine details (the output from 'uname' and 'arch'):</action> <action type="shell_command">uname</action> <action type="shell_command">arch</action> <action type="shell_command">echo If pre-compiled MIRA binaries are now available for this, please report this</action> <action type="shell_command">echo via https://github.com/peterjc/pico_galaxyt/issues - thank you!</action> <action type="shell_command">false</action> <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> </actions> <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> </action> <action type="set_environment"> <environment_variable action="set_to" name="MIRA4">$INSTALL_DIR</environment_variable> </action> </actions_group> </install> <readme> Downloads MIRA v4.0 from Sourceforge, requesting Bastien's precompiled binaries for 64 bit (x86_64) Linux or Mac OS X. Other platforms where compilation from source would be required (e.g. 32 bit Linux) are not supported by this automated installation script. http://chevreux.org/projects_mira.html http://sourceforge.net/projects/mira-assembler/ </readme> </package> </tool_dependency>