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view test-data/ecoli.mira4_de_novo.fasta @ 21:4abe8d59a438 draft

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Uploaded v0.0.4 preview 1; fix getting BAM without MAF
author peterjc
date Tue, 28 Oct 2014 08:29:59 -0400
parents 133b863a8a40
children
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>MIRA_c1
gccagggctattttaccggcgcagtatcgccgccaggattgcattgcgcacgggcgacat
ctggcaggcttcattcacgcctgctattcccgtcagcctgagcttgccgcgaagctgatg
aaagatgttatcgctgaaccctaccgtgaacggttactgccaggcttccggcaggcgcgg
caggcggtcgcggaaatcggcgcggtagcgagcggtatctccggctccggcccgaccttg
ttcgctctgtgtgacaagccggaaaccgcccagcgcgttgccgactggttgggtaagaac
tacctgcaaaatcaggaaggttttgttcatatttgccggctggatacggcgggcgcacga
gtactggaaaactaaatgaaactctacaatctgaaagatcacaacgagcaggtcagcttt
gcgcaagccgtaacccaggggttgggcaaaaatcaggggctgttttttccgcacgacctg
ccggaattcagcctgactgaaattgatgagatgctgaagctggattttgtcacccgcagt
gcgaagatcctctcggcgtttattggtgatgaaatcccacaggaaatcctggaagagcgc
gtgcgcgcggcgtttgccttcccggctccggtcgccaatgttgaaagcgatgtcggttgt
ctggaattgttccacgggccaacgctggcatttaaagatttcggcggtcgctttatggca
caaatgctgacccatattgcgggtgataagccagtgaccattctgaccgcgacctccggt
gataccggagcggcagtggctcatgctttctacggtttaccgaatgtgaaagtggttatc
ctctatccacgaggcaaaatcagtccactgcaagaaaaactgttctgtacattgggcggc
aatatcgaaactgttgccatcgacggcgatttcgatgcctgtcaggcgctggtgaagcag
gcgtttgatgatgaagaactgaaagtggcgctagggttaaactcggctaactcgattaac
atcagccgtttgctggcgcagatttgctactactttgaagctgttgcgcagctgccgcag
gagacgcgcaaccagctggttgtctcggtgccaagcggaaacttcggcgatttgacggcg
ggtctgctggcgaagtcactcggtctgccggtgaaacgttttattgctgcgaccaacgtg
aacgataccgtgccacgtttcctgcacgacggtcagtggtcacccaaagcgactcaggcg
acgttatccaacgcgatggacgtgagtcagccgaacaactggccgcgtgtggaagagttg
ttccgccgcaaaatctggcaactgaaagagctgggttatgcagccgtggatgatgaaacc
acgcaacagacaatgcgtgagttaaaagaactgggctacacttcggagccgcacgctgcc
gtagcttatcgtgcgctgcgtgatcagttgaatccaggcgaatatggcttgttcctcggc
accgcgcatccggcgaaatttaaagagagcgtggaagcgattctcggtgaaacgttggat
ctgccaaaagagctggcagaacgtgctgatttacccttgctttcacataatctgcccgcc
gattttgctgcgttgcgtaaattgatgatgaatcatcagtaaaatctattcattatctca
atagcttttcattctgactgcaacgggcaatatgtctctgtgtggattaaaaaaagagtg
tctgatagcagcttctgaactggttacctgccgtgagtaaattaaaattttattgactta
ggtcactaaatactttaaccaatataggcatagcgcacagacagataaaaattacagagt
acacaacatccatgaaacgcattagcaccaccattaccaccaccatcaccattaccacaa
cggtgcgggctgacgcgtacaggaaacacagaaaaaagcccgcacctgacagtgcgggct
ttttttttcgaccaaaggtaacgaggtaacaaccatgcgagagttgaagttcggcggtac
atcagtggcaaatgcagaacgttttctgcgtgttgccgatattctggaaagcaatgccag
gcaggggcaggtggccaccgtcctctctgcccccgccaaaacaccaaccacctggtggcg
atgattgaaaaaaccattagcggccaggatgctttacccaatatcagcgatgccgaacgt
atttttgccgaacttttgacgggactcgccgccgcccagccggggttcccgctggcgacg
tcaattgaaaactttcgtcgatcaggaatttgcccaaataaaacatgtcctgcatggcat
tagtttgttggggcagtgcccggatagcatcaacgctgcgctgatttgccgtggcgagaa
aatgtcgatcgccgttatggccggcgtattagaagcgcgcggtcacaacgttactgttat
cgatccggtcgaaaaactgctggcagtggggcattacctcgaatctaccgtcgatattgc
tgagtccacccgccgtattgcggcaagccgcattccggctgatcacatggtgctgatggc
aggtttcaccgccggtaatgaaaaaggcgaactggtggtgcttggacgcaacggttccga
ctactctgctgcggtgctggctgcctgtttacgcgccgattgttgcgagatttggacgga
cgttgacggggtctatacctgcgacccgcgtcaggtgcccgatgcgaggttgttgaagtc
gatgtcctaccaggaagcgatggagctttcctacttcggcgctaaagttcttcacccccg
caccattacccccatcgcccagttccagatcccttgcctgattaaaaataccggaaatcc
tcaagcaccaggtacgctcattggtgccagccgtgatgaagacgaattaccggtcaaggg
catttccaatctgaataacatggcaatgttcagcgtttctggtccggggatgaaagggat
ggtcggcatggcggcgcgcgtctttgcagcgatgtcacgcgcccgtatttccgtggtgct
gattacgcaatcatcttccgaatacagcatcagtttctgcgttccacaaagcgactgtgt
gcgagctgaacgggcaatgcaggaagagttctacctggaactgaaagaaggcttactgga
gccgctggcagtgacggaacggctggccattatctcggtggtaggtgatggtatgcgcac
cttgcgtgggatctcggcgaaattctttgccgcactggcccgcgccaatatcaacattgt
cgccattgctcagggatcttctgaacgctcaatctctgtcgtggtaaataacgatgatgc
gaccactggcgtgcgcgttactcatcagatgctgttcaataccgatcaggttatcgaagt
gtttgtgattggcgtcggtggcgttggcggtgcgctgctggagcaactgaagcgtcagca
aagctggctgaagaataaacatatcgacttacgtgtctgcggtgttgccaactcgaaggc
tctgctcaccaatgtacatggccttaatctggaaaactggcaggaagaactggcgcaagc
caaagagccgtttaatctcgggcgcttaattcgcctcgtgaaagaatatcatctgctgaa
cccggtcattgttgactgcacttccagccaggcagtggcggatcaatatgccgacttcct
gcgcgaaggtttccacgttgtcacgccgaacaaaaaggccaacacctcgtcgatggatta
ctaccatcagttgcgttatgcggcggaaaaatcgcggcgtaaattcctctatgacaccaa
cgttggggctggattaccggttattgagaacctgcaaaatctgctcaatgcaggtgatga
attgatgaagttctccggcattctttctggttcgctttcttatatcttcggcaagttaga
cgaaggcatgagtttctccgaggcgaccacgctggcgcgggaaatgggttataccgaacc
ggacccgcgagatgatctttctggtatggatgtggcgcgtaaactattgattctcgctcg
tgaaacgggacgtgaactggagctggcggatattgaaattgaacctgtgctgcccgcaga
gtttaacgccgagggtgatgttgccgcttttatggcgaatctgtcacaactcgacgatct
ctttgccgcgcgcgtggcgaaggcccgtgatgaaggaaaagttttgcgctatgttggcaa
tattgatgaagatggcgtctgccgcgtgaagattgccgaagtggatggtaatgatccgct
gttcaaagtgaaaaatggcgaaaacgccctggccttctatagccactattatcagccgct
gccgttggtactgcgcggatatggtgcgggcaatgacgttacagctgccggtgtctttgc
tgatctgctacgtaccctctcatggaagttaggagtctgacatggttaaagtttatgccc
cggcttccagtgccaatatgagcgtcgggtttgatgtgctcggggcggcggtgacacctg
ttgatggtgcattgctcggagatgtagtcacggttgaggcggcagagacattcagtctca
acaacctcggacgctttgccgataagctgccgtcagaaccacgggaaaatatcgtttatc
agtgctgggagcgtttttgccaggaactgggtaagcaaattccagtggcgatgaccctgg
aaaagaatatgccgatcggttcgggcttaggctccagtgcctgttcggtggtcgcggcgc
tgatggcgatgaatgaacactgcggcaagccgcttaatgacactcgtttgctggctttga
tgggcgagctggaaggccgtatctccggcagcattcattacgacaacgtggcaccgtgtt
ttctcggtggtatgcagttgatgatcgaagaaaacgacatcatcagccagcaagtgccag
ggtttgatgagtggctgtgggtgctggcgtatccggggattaaagtctcgacggcagaag
ccagggctattttaccggcgcagtatcgccgcca