diff tools/mira4_0/mira4_make_bam.py @ 31:fd95aaef8818 draft

planemo upload for repository https://github.com/peterjc/galaxy_mira/tree/master/tools/mira4_0 commit bc3d484c5cd68ddcf456db2fff489d584aa2034c

--- a/tools/mira4_0/mira4_make_bam.py	Wed Oct 07 09:08:29 2015 -0400
+++ b/tools/mira4_0/mira4_make_bam.py	Wed Feb 10 09:07:39 2016 -0500
@@ -7,10 +7,6 @@
 import subprocess
 import tempfile
 
-def sys_exit(msg, err=1):
-    sys.stderr.write(msg+"\n")
-    sys.exit(err)
-
 def run(cmd, log_handle):
     try:
         child = subprocess.Popen(cmd, shell=True,
@@ -89,4 +85,4 @@
     mira_convert, maf_file, fasta_file, bam_file = sys.argv[1:]
     msg = make_bam(mira_convert, maf_file, fasta_file, bam_file, sys.stdout)
     if msg:
-        sys_exit(msg)
+        sys.exit(msg)