diff tools/mira4/README.rst @ 19:8487d70e82aa draft

Uploaded v0.0.3 preview 1, target MIRA v4.0.2

--- a/tools/mira4/README.rst	Tue Mar 25 07:37:50 2014 -0400
+++ b/tools/mira4/README.rst	Wed May 21 06:56:06 2014 -0400
@@ -22,7 +22,7 @@
 
 This should be straightforward. Via the Tool Shed, Galaxy should automatically
 install the 'mira' datatype, samtools, and download and install the precompiled
-binary for MIRA v4.0 for the Galaxy wrapper, and run any tests.
+binary for MIRA v4.0.2 for the Galaxy wrapper, and run any tests.
 
 For MIRA 4, the Galaxy wrapper has been split in two, allowing separate
 cluster settings for de novo usage (high RAM) and mapping (lower RAM).
@@ -56,7 +56,7 @@
   <tool file="mira4/mira4_de_novo.xml" />
   <tool file="mira4/mira4_mapping.xml" />
 
-You will also need to install MIRA, we used version 4.0, and define the
+You will also need to install MIRA, we used version 4.0.2, and define the
 environment variable ``$MIRA4`` pointing at the folder containing the binaries.
 See:
 
@@ -85,11 +85,12 @@
 ------- ----------------------------------------------------------------------
 v0.0.1  - Initial version (prototype for MIRA 4.0 RC4, based on wrapper for v3.4)
 v0.0.2  - Include BAM output (using ``miraconvert`` and ``samtools``).
-        - Updated to target MIRA 4.0
+        - Updated to target MIRA 4.0.1
         - Simplified XML to apply input format to output data.
         - Sets temporary folder at run time to respect environment variables
           (``$TMPDIR``, ``$TEMP``, or ``$TMP`` in that order). This was
           previously hard coded as ``/tmp``.
+v0.0.3  - Updated to target MIRA 4.0.2
 ======= ======================================================================