Mercurial > repos > peterjc > mira4_assembler
comparison tools/mira4_0/mira4_convert.py @ 38:cee8f9005e43 draft
planemo upload for repository https://github.com/peterjc/galaxy_mira/tree/master/tools/mira4_0 commit 206259620376b322fc8ed99a6efdd3712f38764b
| author | peterjc |
|---|---|
| date | Wed, 11 Jul 2018 12:35:35 -0400 |
| parents | 259891fce7fd |
| children | bbf14bb9607b |
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| 37:eeeb21870a73 | 38:cee8f9005e43 |
|---|---|
| 43 else: | 43 else: |
| 44 sys.exit("Return code %i from command:\n%s\n%s" % (return_code, cmd_str, stderr)) | 44 sys.exit("Return code %i from command:\n%s\n%s" % (return_code, cmd_str, stderr)) |
| 45 | 45 |
| 46 | 46 |
| 47 def get_version(mira_binary): | 47 def get_version(mira_binary): |
| 48 """Run MIRA to find its version number""" | 48 """Run MIRA to find its version number.""" |
| 49 # At the commend line I would use: mira -v | head -n 1 | 49 # At the commend line I would use: mira -v | head -n 1 |
| 50 # however there is some pipe error when doing that here. | 50 # however there is some pipe error when doing that here. |
| 51 cmd = [mira_binary, "-v"] | 51 cmd = [mira_binary, "-v"] |
| 52 try: | 52 try: |
| 53 child = subprocess.Popen(cmd, | 53 child = subprocess.Popen(cmd, |
