comparison tools/mira4_0/README.rst @ 26:8aeb92e76159 draft

planemo upload for repository https://github.com/peterjc/galaxy_mira/tree/master/tools/mira4_0 commit 4fbb738ddbc87132ca11dfaaaa38aa922ac87115-dirty

25:55ae131c5862

        - Reorder XML elements (internal change only).
        - Use the ``format_source=...`` tag in the MIRA bait wrapper.
        - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
        - MIRA 4.0.2 dependency now declared via dedicated Tool Shed package.
v0.0.8  - Renamed folder now have a MIRA 4.9.x wrapper (internal change only).
======= ======================================================================


Developers
==========

Development is on a dedicated GitHub repository:
https://github.com/peterjc/pico_galaxy/tree/master/tools/mira_4_0

For pushing a release to the test or main "Galaxy Tool Shed", use the following
Planemo commands (which requires you have set your Tool Shed access details in
``~/.planemo.yml`` and that you have access rights on the Tool Shed)::

    $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/mira4_0/
    ...

or::

    $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/mira4_0/
    ...

To just build and check the tar ball, use::

    $ planemo shed_upload --tar_only  ~/repositories/pico_galaxy/tools/mira4_0/
    ...
    $ tar -tzf shed_upload.tar.gz 
    test-data/U13small_m.fastq
    ...

26:8aeb92e76159

        - Reorder XML elements (internal change only).
        - Use the ``format_source=...`` tag in the MIRA bait wrapper.
        - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
        - MIRA 4.0.2 dependency now declared via dedicated Tool Shed package.
v0.0.8  - Renamed folder now have a MIRA 4.9.x wrapper (internal change only).
v0.0.9  - Additional unit tests now covering ``miraconvert``.
======= ======================================================================


Developers
==========

Development is on a dedicated GitHub repository:
https://github.com/peterjc/galaxy_mira/tree/master/tools/mira4_0

For pushing a release to the test or main "Galaxy Tool Shed", use the following
Planemo commands (which requires you have set your Tool Shed access details in
``~/.planemo.yml`` and that you have access rights on the Tool Shed)::

    $ planemo shed_update -t testtoolshed --check_diff tools/mira4_0/
    ...

or::

    $ planemo shed_update -t toolshed --check_diff tools/mira4_0/
    ...

To just build and check the tar ball, use::

    $ planemo shed_upload --tar_only tools/mira4_0/
    ...
    $ tar -tzf shed_upload.tar.gz 
    test-data/U13small_m.fastq
    ...