comparison tools/mira4/mira4_de_novo.xml @ 17:5bbaa930d7fa draft

Uploaded v0.0.2 preview 9, more functional tests

16:4c6e4d583b8f

        </test>
        -->
        <!-- Simple assembly based on MIRA's minidemo/demo4 example
             Note we're using just one repeat group,
             but several parameters with the repeat
             (in order to specify sanger reads, no pairing)
        <test>
            <param name="job_type" value="genome" />
            <param name="job_quality" value="accurate" />
            <param name="technology" value="sanger" />
            <param name="type" value="none" />
            <param name="filenames" value="U13small_m.fastq" ftype="fastqsanger" />
            <output name="out_fasta" file="U13small_m.mira4_de_novo.fasta" ftype="fasta" />
        </test>
        -->
    <!-- Simple assembly based on MIRA's minidemo/solexa1 example
             Note we're using just one repeat group,
             but two parameters within the repeat (filename, no pairing)
         -->
        <test>
            <param name="job_type" value="genome" />

17:5bbaa930d7fa

        </test>
        -->
        <!-- Simple assembly based on MIRA's minidemo/demo4 example
             Note we're using just one repeat group,
             but several parameters with the repeat
        -->
        <test>
            <param name="job_type" value="genome" />
            <param name="job_quality" value="accurate" />
            <param name="technology" value="sanger" />
            <param name="type" value="none" />
            <param name="filenames" value="U13small_m.fastq" ftype="fastqsanger" />
            <output name="out_fasta" file="U13small_m.mira4_de_novo.fasta" ftype="fasta" />
            <output name="out_bam" file="empty_file.dat" compare="contains" />
            <output name="out_maf" file="empty_file.dat" compare="contains" />
            <output name="out_log" file="empty_file.dat" compare="contains" />
        </test>
        <!-- Simple assembly based on MIRA's minidemo/solexa1 example
             Note we're using just one repeat group,
             but two parameters within the repeat (filename, no pairing)
         -->
        <test>
            <param name="job_type" value="genome" />