Mercurial > repos > peterjc > mira4_assembler

comparison tools/mira4/mira4_de_novo.xml @ 18:381aa262c8cb draft

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Uploaded v0.0.2 preview 10, override /tmp via environment variable
author peterjc
date Tue, 25 Mar 2014 07:37:50 -0400
parents 5bbaa930d7fa
children 8487d70e82aa
comparison
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17:5bbaa930d7fa 18:381aa262c8cb
92 ## and without this MIRA aborts with read names over 40 characters 92 ## and without this MIRA aborts with read names over 40 characters
93 ## due to limitations of some downstream tools. 93 ## due to limitations of some downstream tools.
94 ## 94 ##
95 ## -DI:trt is short for -DIRECTORY:tmp_redirected_to and should 95 ## -DI:trt is short for -DIRECTORY:tmp_redirected_to and should
96 ## point to a local hard drive (not something like NFS on network). 96 ## point to a local hard drive (not something like NFS on network).
97 ## We replace /tmp with an environment variable via mira4.py
97 98
98 #for $rg in $read_group 99 #for $rg in $read_group
99 100
100 ##This bar goes into the manifest as a comment line 101 ##This bar goes into the manifest as a comment line
101 #------------------------------------------------------------------------------ 102 #------------------------------------------------------------------------------