comparison tools/mira4_0/mira4_de_novo.xml @ 33:1291ed21789f draft

planemo upload for repository https://github.com/peterjc/galaxy_mira/tree/master/tools/mira4_0 commit 1d7d466d01b23d03d214e93f1f8efa19cfa18268

32:56b421d59805

                <when value="none" /><!-- no further questions -->
            </conditional>
            <param name="filenames" type="data" format="fastq,mira" multiple="true" optional="false" label="Read file(s)"
                  help="Multiple files allowed, for example paired reads can be given as two files (MIRA looks at read names to identify pairs)." />
        </repeat>
        <param name="maf_wanted" type="boolean" label="Output assembly in MIRA's own format?" checked="False" />
        <param name="bam_wanted" type="boolean" label="Convert assembly into BAM format?" checked="True" />
    </inputs>
    <outputs>
        <data name="out_fasta" format="fasta" label="MIRA de novo contigs (FASTA)" />
        <data name="out_bam" format="bam" label="MIRA de novo assembly (BAM)">
            <filter>bam_wanted is True</filter>

33:1291ed21789f

                <when value="none" /><!-- no further questions -->
            </conditional>
            <param name="filenames" type="data" format="fastq,mira" multiple="true" optional="false" label="Read file(s)"
                  help="Multiple files allowed, for example paired reads can be given as two files (MIRA looks at read names to identify pairs)." />
        </repeat>
        <param name="maf_wanted" type="boolean" label="Output assembly in MIRA's own format?" checked="false" />
        <param name="bam_wanted" type="boolean" label="Convert assembly into BAM format?" checked="true" />
    </inputs>
    <outputs>
        <data name="out_fasta" format="fasta" label="MIRA de novo contigs (FASTA)" />
        <data name="out_bam" format="bam" label="MIRA de novo assembly (BAM)">
            <filter>bam_wanted is True</filter>