comparison tools/mira4_0/mira4_bait.py @ 34:0785a6537f3e draft

planemo upload for repository https://github.com/peterjc/galaxy_mira/tree/master/tools/mira4_0 commit 6405ba93fcec7ea93452bf54d559c7507ee7a57c

33:1291ed21789f

    """Run MIRA to find its version number"""
    # At the commend line I would use: mira -v | head -n 1
    # however there is some pipe error when doing that here.
    cmd = [mira_binary, "-v"]
    try:
        child = subprocess.Popen(cmd,
                                 stdout=subprocess.PIPE,
                                 stderr=subprocess.STDOUT)
    except Exception as err:
        sys.stderr.write("Error invoking command:\n%s\n\n%s\n" % (" ".join(cmd), err))
        sys.exit(1)

cmd = " ".join(cmd_list)
# print cmd
start_time = time.time()
try:
    # Run MIRA
    child = subprocess.Popen(cmd_list,
                             stdout=subprocess.PIPE,
                             stderr=subprocess.STDOUT)
except Exception as err:
    sys.stderr.write("Error invoking command:\n%s\n\n%s\n" % (cmd, err))
    sys.exit(1)

34:0785a6537f3e

    """Run MIRA to find its version number"""
    # At the commend line I would use: mira -v | head -n 1
    # however there is some pipe error when doing that here.
    cmd = [mira_binary, "-v"]
    try:
        child = subprocess.Popen(cmd, universal_newlines=True,
                                 stdout=subprocess.PIPE,
                                 stderr=subprocess.STDOUT)
    except Exception as err:
        sys.stderr.write("Error invoking command:\n%s\n\n%s\n" % (" ".join(cmd), err))
        sys.exit(1)

cmd = " ".join(cmd_list)
# print cmd
start_time = time.time()
try:
    # Run MIRA
    child = subprocess.Popen(cmd_list, universal_newlines=True,
                             stdout=subprocess.PIPE,
                             stderr=subprocess.STDOUT)
except Exception as err:
    sys.stderr.write("Error invoking command:\n%s\n\n%s\n" % (cmd, err))
    sys.exit(1)