Mercurial > repos > peterjc > get_orfs_or_cdss
changeset 26:bec536fd4640 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/get_orfs_or_cdss commit 7138d537aaec46596985acf123348fe6f99cd6f1-dirty
| author | peterjc |
|---|---|
| date | Fri, 19 May 2017 06:21:32 -0400 |
| parents | 9adb26199d9b |
| children | 9ef39735ef44 |
| files | tools/get_orfs_or_cdss/get_orfs_or_cdss.py |
| diffstat | 1 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/tools/get_orfs_or_cdss/get_orfs_or_cdss.py Wed May 17 11:18:27 2017 -0400 +++ b/tools/get_orfs_or_cdss/get_orfs_or_cdss.py Fri May 19 06:21:32 2017 -0400 @@ -25,9 +25,11 @@ from optparse import OptionParser -usage = """Use as follows: +usage = r"""Use as follows: -$ python get_orfs_or_cdss.py -i genome.fa -f fasta --table 11 -t CDS -e open -m all -s both --on cds.nuc.fa --op cds.protein.fa --ob cds.bed --og cds.gff3 +$ python get_orfs_or_cdss.py -i genome.fa -f fasta --table 11 \ +-t CDS -e open -m all -s both --on cds.nuc.fa --op cds.protein.fa \ +--ob cds.bed --og cds.gff3 """ try: