changeset 2:88f002677c63 draft

Uploaded v0.0.4, preview 1, adds link to Tool Shed entry.

--- a/tools/filters/get_orfs_or_cdss.txt	Tue Apr 23 11:47:26 2013 -0400
+++ b/tools/filters/get_orfs_or_cdss.txt	Thu May 02 13:12:15 2013 -0400
@@ -10,6 +10,20 @@
 sequences (CDSs) where the first potential start codon is used. See the
 help text in the XML file for more information.
 
+This tool is available from the Galaxy Tool Shed at:
+http://toolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss
+
+
+Automated Installation
+======================
+
+This should be straightforward, Galaxy should automatically download and install
+the tool from the Galaxy Tool Shed, and run the unit tests.
+
+
+Manual Installation
+===================
+
 There are just two files to install:
 
 * get_orfs_or_cdss.py (the Python script)
@@ -40,6 +54,7 @@
        - Use the new <stdio> settings in the XML wrappers to catch errors
 v0.0.3 - Include unit tests.
        - Record Python script version when run from Galaxy.
+v0.0.4 - Link to Tool Shed added to help text and this documentation.
 
 
 Developers

--- a/tools/filters/get_orfs_or_cdss.xml	Tue Apr 23 11:47:26 2013 -0400
+++ b/tools/filters/get_orfs_or_cdss.xml	Thu May 02 13:12:15 2013 -0400
@@ -1,4 +1,4 @@
-<tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.0.3">
+<tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.0.4">
 	<description>e.g. to get peptides from ESTs</description>
 	<version_command interpreter="python">get_orfs_or_cdss.py --version</version_command>
 	<command interpreter="python">
@@ -160,5 +160,7 @@
 molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3.
 http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878.
 
+This tool is available to install into other Galaxy Instances via the Galaxy
+Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss
 	</help>
 </tool>