# HG changeset patch
# User peterjc
# Date 1495034307 14400
# Node ID 9adb26199d9b28a2dd22abd98b9f8e04213536cc
# Parent  84232d9e269c88177962d572bdb8898e158723a2
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/get_orfs_or_cdss commit 37d5b47ec23e2cbaa453cc660bb1fcbb10dd34ee-dirty

diff -r 84232d9e269c -r 9adb26199d9b tools/get_orfs_or_cdss/README.rst
--- a/tools/get_orfs_or_cdss/README.rst	Tue May 16 09:10:25 2017 -0400
+++ b/tools/get_orfs_or_cdss/README.rst	Wed May 17 11:18:27 2017 -0400
@@ -82,6 +82,7 @@
           Gracilibacteria.
 v0.2.2  - Use ``<command detect_errors="aggressive">`` (internal change only).
         - Single quote command line arguments (internal change only).
+v0.2.3  - Python 3 compatible print function.
 ======= ======================================================================
 
 
diff -r 84232d9e269c -r 9adb26199d9b tools/get_orfs_or_cdss/get_orfs_or_cdss.py
--- a/tools/get_orfs_or_cdss/get_orfs_or_cdss.py	Tue May 16 09:10:25 2017 -0400
+++ b/tools/get_orfs_or_cdss/get_orfs_or_cdss.py	Wed May 17 11:18:27 2017 -0400
@@ -18,6 +18,8 @@
 See accompanying text file for licence details (MIT licence).
 """
 
+from __future__ import print_function
+
 import re
 import sys
 
@@ -79,7 +81,7 @@
 options, args = parser.parse_args()
 
 if options.version:
-    print("v0.2.0")
+    print("v0.2.3")
     sys.exit(0)
 
 if not options.input_file:
@@ -102,8 +104,8 @@
 else:
     sys.exit("Unsupported file type %r" % options.seq_format)
 
-print "Genetic code table %i" % options.table
-print "Minimum length %i aa" % options.min_len
+print("Genetic code table %i" % options.table)
+print("Minimum length %i aa" % options.min_len)
 # print "Taking %s ORF(s) from %s strand(s)" % (mode, strand)
 
 starts = sorted(table_obj.start_codons)
@@ -283,4 +285,4 @@
 if out_bed and out_bed is not sys.stdout:
     out_bed.close()
 
-print "Found %i %ss in %i sequences" % (out_count, options.ftype, in_count)
+print("Found %i %ss in %i sequences" % (out_count, options.ftype, in_count))
diff -r 84232d9e269c -r 9adb26199d9b tools/get_orfs_or_cdss/get_orfs_or_cdss.xml
--- a/tools/get_orfs_or_cdss/get_orfs_or_cdss.xml	Tue May 16 09:10:25 2017 -0400
+++ b/tools/get_orfs_or_cdss/get_orfs_or_cdss.xml	Wed May 17 11:18:27 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.2.2">
+<tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.2.3">
     <description>e.g. to get peptides from ESTs</description>
     <requirements>
         <requirement type="package" version="1.67">biopython</requirement>