# HG changeset patch # User peterjc # Date 1494940225 14400 # Node ID 84232d9e269c88177962d572bdb8898e158723a2 # Parent 583f155494c3931406c152dae0850b2284cb98f9 v0.2.2 Internal changes to command line handling diff -r 583f155494c3 -r 84232d9e269c tools/get_orfs_or_cdss/README.rst --- a/tools/get_orfs_or_cdss/README.rst Thu May 11 18:35:11 2017 -0400 +++ b/tools/get_orfs_or_cdss/README.rst Tue May 16 09:10:25 2017 -0400 @@ -45,7 +45,7 @@ You will also need to install Biopython 1.65 or later (slightly older versions should be fine, but will not have the latest NCBI genetic code tables). -If you wish to run the unit tests, also move/copy the ``test-data/`` files +If you wish to run the unit tests, also move/copy the ``test-data/`` files under Galaxy's ``test-data/`` folder. Then:: ./run_tests.sh -id get_orfs_or_cdss @@ -79,7 +79,7 @@ v0.2.0 - Tool now also outputs GFF3 formatted calls (Eric Rasche). v0.2.1 - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda. - Added NCBI genetic code table 24, Candidate Division SR1 and - Gracilibacteria. + Gracilibacteria. v0.2.2 - Use ```` (internal change only). - Single quote command line arguments (internal change only). ======= ======================================================================