# HG changeset patch
# User peterjc
# Date 1384967184 18000
# Node ID 09b5b1af9b8f4d56633a52e8077ea3c43581620b
# Parent  308ec20faefb105573e969ea107b9f0701bab911
Uploaded v0.0.6, corrected automated dependency definition

diff -r 308ec20faefb -r 09b5b1af9b8f tools/get_orfs_or_cdss/README.rst
--- a/tools/get_orfs_or_cdss/README.rst	Fri Sep 27 06:11:59 2013 -0400
+++ b/tools/get_orfs_or_cdss/README.rst	Wed Nov 20 12:06:24 2013 -0500
@@ -67,6 +67,7 @@
         - Adopt standard MIT License.
         - Updated citation information (Cock et al. 2013).
         - Renamed folder and adopted README.rst naming.
+v0.0.6  - Corrected automated dependency defintion.
 ======= ======================================================================
 
 
@@ -82,7 +83,7 @@
 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
 the following command from the Galaxy root folder::
 
-    $ tar -czf get_orfs_or_cdss.tar.gz tools/get_orfs_or_cdss/README.rst tools/get_orfs_or_cdss/get_orfs_or_cdss.* tools/get_orfs_or_cdss/repository_dependencies.xml test-data/get_orf_input*.fasta test-data/Ssuis.fasta
+    $ tar -czf get_orfs_or_cdss.tar.gz tools/get_orfs_or_cdss/README.rst tools/get_orfs_or_cdss/get_orfs_or_cdss.* tools/get_orfs_or_cdss/tool_dependencies.xml test-data/get_orf_input*.fasta test-data/Ssuis.fasta
 
 Check this worked::
 
@@ -90,7 +91,7 @@
     tools/get_orfs_or_cdss/README.rst
     tools/get_orfs_or_cdss/get_orfs_or_cdss.py
     tools/get_orfs_or_cdss/get_orfs_or_cdss.xml
-    tools/get_orfs_or_cdss/repository_dependencies.xml
+    tools/get_orfs_or_cdss/tool_dependencies.xml
     test-data/get_orf_input.fasta
     test-data/get_orf_input.Suis_ORF.nuc.fasta
     test-data/get_orf_input.Suis_ORF.prot.fasta
diff -r 308ec20faefb -r 09b5b1af9b8f tools/get_orfs_or_cdss/repository_dependencies.xml
--- a/tools/get_orfs_or_cdss/repository_dependencies.xml	Fri Sep 27 06:11:59 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<repositories description="This requires Biopython as a dependency.">
-<!-- Leave out the tool shed and revision to get the current
-     tool shed and latest revision at the time of upload -->
-<repository changeset_revision="ac9cc2992b69" name="package_biopython_1_62" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-</repositories>
diff -r 308ec20faefb -r 09b5b1af9b8f tools/get_orfs_or_cdss/tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/get_orfs_or_cdss/tool_dependencies.xml	Wed Nov 20 12:06:24 2013 -0500
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="biopython" version="1.62">
+        <repository changeset_revision="ac9cc2992b69" name="package_biopython_1_62" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>