# HG changeset patch
# User peterjc
# Date 1367514378 14400
# Node ID fe469503441bb46102e8273204293306cd738d71
# Parent  81ac324efa49fe64ff4b2a4ae9c75cb70e517a34
Uploaded v0.0.7 preview 1, added links to Tool Shed.

diff -r 81ac324efa49 -r fe469503441b tools/fastq/fastq_paired_unpaired.txt
--- a/tools/fastq/fastq_paired_unpaired.txt	Thu May 02 11:27:46 2013 -0400
+++ b/tools/fastq/fastq_paired_unpaired.txt	Thu May 02 13:06:18 2013 -0400
@@ -1,7 +1,8 @@
 Galaxy tool to divide FASTQ files into paired and unpaired reads
 ================================================================
 
-This tool is copyright 2010 by Peter Cock, SCRI, UK. All rights reserved.
+This tool is copyright 2010-2013 by Peter Cock, The James Hutton Institute
+(formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
 See the licence text below.
 
 This tool is a short Python script (using the Biopython library functions) which
@@ -12,6 +13,20 @@
 Note that the FASTQ variant is unimportant (Sanger, Solexa, Illumina, or even
 Color Space should all work equally well).
 
+This tool is available from the Galaxy Tool Shed at:
+http://toolshed.g2.bx.psu.edu/view/peterjc/fastq_paired_unpaired
+
+
+Automated Installation
+======================
+
+This should be straightforward, Galaxy should automatically download and install
+the tool and run the unit tests.
+
+
+Manual Installation
+===================
+
 There are just two files to install:
 
 * fastq_paired_unpaired.py (the Python script)
@@ -39,6 +54,7 @@
 v0.0.5 - Handle Illumina 1.8 style pair names
 v0.0.6 - Record script version when run from Galaxy
        - Added unit test (FASTQ file using Sanger naming)
+v0.0.7 - Link to Tool Shed added to help text and this documentation.
 
 
 Developers
diff -r 81ac324efa49 -r fe469503441b tools/fastq/fastq_paired_unpaired.xml
--- a/tools/fastq/fastq_paired_unpaired.xml	Thu May 02 11:27:46 2013 -0400
+++ b/tools/fastq/fastq_paired_unpaired.xml	Thu May 02 13:06:18 2013 -0400
@@ -1,4 +1,4 @@
-<tool id="fastq_paired_unpaired" name="Divide FASTQ file into paired and unpaired reads" version="0.0.6">
+<tool id="fastq_paired_unpaired" name="Divide FASTQ file into paired and unpaired reads" version="0.0.7">
 	<description>using the read name suffices</description>
 	<version_command interpreter="python">fastq_paired_unpaired.py --version</version_command>
 	<command interpreter="python">
@@ -97,5 +97,9 @@
  * WTSI_1055_4p17.p1kapIBF paired with WTSI_1055_4p17.q1kapIBR
  * WTSI_1055_4p17.p1kpIBF paired with WTSI_1055_4p17.q1kpIBR
 
+**Citation**
+
+This tool is available to install into other Galaxy Instances via the Galaxy
+Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/fastq_paired_unpaired
 	</help>
 </tool>