# HG changeset patch # User peterjc # Date 1494521120 14400 # Node ID 7ac0bb3403c6911806e984a8d3b4584ca2a13282 # Parent 3495ec8df5ca6f3e1913596df54129f5695c2f3b planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_paired_unpaired commit 2c1cc3ac829140d469816ec5e9892f96624270bf-dirty diff -r 3495ec8df5ca -r 7ac0bb3403c6 tools/fastq_paired_unpaired/README.rst --- a/tools/fastq_paired_unpaired/README.rst Wed May 10 12:42:06 2017 -0400 +++ b/tools/fastq_paired_unpaired/README.rst Thu May 11 12:45:20 2017 -0400 @@ -74,6 +74,8 @@ v0.1.3 - Minor internal changes to Python script for error reporting & style. - Updated to point at Biopython 1.67 (latest version in Tool Shed). - Explicit dependency on ``galaxy_sequence_utils``. +v0.1.4 - Use ```` (internal change only). + - Single quote command line arguments (internal change only). ======= ====================================================================== diff -r 3495ec8df5ca -r 7ac0bb3403c6 tools/fastq_paired_unpaired/fastq_paired_unpaired.xml --- a/tools/fastq_paired_unpaired/fastq_paired_unpaired.xml Wed May 10 12:42:06 2017 -0400 +++ b/tools/fastq_paired_unpaired/fastq_paired_unpaired.xml Thu May 11 12:45:20 2017 -0400 @@ -1,21 +1,18 @@ - + using the read name suffices galaxy_sequence_utils biopython - - - - - - fastq_paired_unpaired.py --version - -fastq_paired_unpaired.py $input_fastq.extension $input_fastq + +python $__tool_directory__/fastq_paired_unpaired.py --version + + +python $__tool_directory__/fastq_paired_unpaired.py '$input_fastq.extension' '$input_fastq' #if $output_choice_cond.output_choice=="separate" - $output_forward $output_reverse + '$output_forward' '$output_reverse' #elif $output_choice_cond.output_choice=="interleaved" - $output_paired + '$output_paired' #end if $output_singles