# HG changeset patch
# User peterjc
# Date 1541778722 18000
# Node ID 9e02126950942a87de255505d41f442b7232dd77
# Parent  0ffb956f0a6b2b7aee64fffd868c8fb88dc517c7
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_pair_names commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty

diff -r 0ffb956f0a6b -r 9e0212695094 tools/fastq_pair_names/fastq_pair_names.py
--- a/tools/fastq_pair_names/fastq_pair_names.py	Fri Sep 15 10:23:49 2017 -0400
+++ b/tools/fastq_pair_names/fastq_pair_names.py	Fri Nov 09 10:52:02 2018 -0500
@@ -2,7 +2,7 @@
 """Extract paired read names from FASTQ file(s).
 
 The input file should be a valid FASTQ file(s), the output is two tabular
-files - the paired read names (without suffices), and unpaired read names
+files - the paired read names (without suffixes), and unpaired read names
 (including any unrecognised pair names).
 
 Note that the FASTQ variant is unimportant (Sanger, Solexa, Illumina, or even
diff -r 0ffb956f0a6b -r 9e0212695094 tools/fastq_pair_names/fastq_pair_names.xml
--- a/tools/fastq_pair_names/fastq_pair_names.xml	Fri Sep 15 10:23:49 2017 -0400
+++ b/tools/fastq_pair_names/fastq_pair_names.xml	Fri Nov 09 10:52:02 2018 -0500
@@ -1,5 +1,5 @@
 <tool id="fastq_pair_names" name="Identify paired reads in FASTQ files" version="0.0.5">
-    <description>using the read name suffices</description>
+    <description>using the read name suffixes</description>
     <requirements>
         <requirement type="package" version="1.0.1">galaxy_sequence_utils</requirement>
     </requirements>
@@ -34,7 +34,7 @@
 The input file should be a valid FASTQ file which has been sorted so that
 any partner forward+reverse reads are consecutive. The output files all
 preserve this sort order. Pairing are recognised based on standard name
-suffices (see below).
+suffixes (see below).
 
 Any reads where the forward/reverse naming suffix used is not recognised
 are treated as orphan reads. The tool supports the /1 and /2 convention
@@ -75,7 +75,7 @@
 Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013).
 Galaxy tools and workflows for sequence analysis with applications
 in molecular plant pathology. PeerJ 1:e167
-http://dx.doi.org/10.7717/peerj.167
+https://doi.org/10.7717/peerj.167
 
 This tool is available to install into other Galaxy Instances via the Galaxy
 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/fastq_pair_names