# HG changeset patch
# User peterjc
# Date 1495034245 14400
# Node ID 7df3a874f232fd925d851c9cdfc3a23798f843cc
# Parent  73b6d81cda486591963ae7350f13bdb2a75fedc1
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_pair_names commit 37d5b47ec23e2cbaa453cc660bb1fcbb10dd34ee-dirty

diff -r 73b6d81cda48 -r 7df3a874f232 tools/fastq_pair_names/README.rst
--- a/tools/fastq_pair_names/README.rst	Thu May 11 18:34:08 2017 -0400
+++ b/tools/fastq_pair_names/README.rst	Wed May 17 11:17:25 2017 -0400
@@ -59,6 +59,7 @@
         - Minor internal changes to Python script for error reporting & style.
 v0.0.5  - Use ``<command detect_errors="aggressive">`` (internal change only).
         - Single quote command line arguments (internal change only).
+        - Python 3 compatible print function.
 ======= ======================================================================
 
 
diff -r 73b6d81cda48 -r 7df3a874f232 tools/fastq_pair_names/fastq_pair_names.py
--- a/tools/fastq_pair_names/fastq_pair_names.py	Thu May 11 18:34:08 2017 -0400
+++ b/tools/fastq_pair_names/fastq_pair_names.py	Wed May 17 11:17:25 2017 -0400
@@ -8,21 +8,23 @@
 Note that the FASTQ variant is unimportant (Sanger, Solexa, Illumina, or even
 Color Space should all work equally well).
 
-This script is copyright 2014 by Peter Cock, The James Hutton Institute
+This script is copyright 2014-2017 by Peter Cock, The James Hutton Institute
 (formerly SCRI), Scotland, UK. All rights reserved.
 
 See accompanying text file for licence details (MIT license).
 """
 
+from __future__ import print_function
+
 import os
 import re
 import sys
 
-from galaxy_utils.sequence.fastq import fastqReader
+if "-v" in sys.argv or "--version" in sys.argv:
+    print("0.0.5")
+    sys.exit(0)
 
-if "-v" in sys.argv or "--version" in sys.argv:
-    print "Version 0.0.1"
-    sys.exit(0)
+from galaxy_utils.sequence.fastq import fastqReader
 
 msg = """Expects at least 3 arguments:
 
@@ -134,4 +136,4 @@
 out_pairs.close()
 out_nonpairs.close()
 
-print "%i reads (%i forward, %i reverse, %i neither), %i pairs" % (count, forward, reverse, neither, len(pairs))
+print("%i reads (%i forward, %i reverse, %i neither), %i pairs" % (count, forward, reverse, neither, len(pairs)))
diff -r 73b6d81cda48 -r 7df3a874f232 tools/fastq_pair_names/fastq_pair_names.xml
--- a/tools/fastq_pair_names/fastq_pair_names.xml	Thu May 11 18:34:08 2017 -0400
+++ b/tools/fastq_pair_names/fastq_pair_names.xml	Wed May 17 11:17:25 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="fastq_pair_names" name="Identify paired reads in FASTQ files" version="0.0.4">
+<tool id="fastq_pair_names" name="Identify paired reads in FASTQ files" version="0.0.5">
     <description>using the read name suffices</description>
     <requirements>
         <requirement type="package" version="1.0.1">galaxy_sequence_utils</requirement>