# HG changeset patch
# User peterjc
# Date 1494542048 14400
# Node ID 73b6d81cda486591963ae7350f13bdb2a75fedc1
# Parent  004654008290d49cffef1f478a0e2219cd9f7bbb
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_pair_names commit acaced2b77f2789558b3d4c210ec373f8bdbb7e9-dirty

diff -r 004654008290 -r 73b6d81cda48 tools/fastq_pair_names/README.rst
--- a/tools/fastq_pair_names/README.rst	Wed May 10 12:41:10 2017 -0400
+++ b/tools/fastq_pair_names/README.rst	Thu May 11 18:34:08 2017 -0400
@@ -57,6 +57,8 @@
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
 v0.0.4  - Explicit dependency on ``galaxy_sequence_utils``.
         - Minor internal changes to Python script for error reporting & style.
+v0.0.5  - Use ``<command detect_errors="aggressive">`` (internal change only).
+        - Single quote command line arguments (internal change only).
 ======= ======================================================================
 
 
diff -r 004654008290 -r 73b6d81cda48 tools/fastq_pair_names/fastq_pair_names.xml
--- a/tools/fastq_pair_names/fastq_pair_names.xml	Wed May 10 12:41:10 2017 -0400
+++ b/tools/fastq_pair_names/fastq_pair_names.xml	Thu May 11 18:34:08 2017 -0400
@@ -3,14 +3,11 @@
     <requirements>
         <requirement type="package" version="1.0.1">galaxy_sequence_utils</requirement>
     </requirements>
-    <stdio>
-        <!-- Anything other than zero is an error -->
-        <exit_code range="1:" />
-        <exit_code range=":-1" />
-    </stdio>
-    <version_command interpreter="python">fastq_pair_names.py --version</version_command>
-    <command interpreter="python">
-fastq_pair_names.py $output_paired $output_singles #for i in $input_fastq#"${i}" #end for#
+    <version_command>
+python $__tool_directory__/fastq_pair_names.py --version
+    </version_command>
+    <command detect_errors="aggressive">
+python $__tool_directory__/fastq_pair_names.py '$output_paired' '$output_singles' #for i in $input_fastq#'${i}' #end for#
     </command>
     <inputs>
         <param name="input_fastq" type="data" multiple="true" format="fastq" label="FASTQ file(s)"/>