# HG changeset patch
# User peterjc
# Date 1495034218 14400
# Node ID 35c358aa7801af895914e69fab5f436a836929df
# Parent  d6976a4c055bd464fdb8c748afbca2922eb8c39a
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/effectiveT3 commit 37d5b47ec23e2cbaa453cc660bb1fcbb10dd34ee-dirty

diff -r d6976a4c055b -r 35c358aa7801 tools/effectiveT3/README.rst
--- a/tools/effectiveT3/README.rst	Thu May 11 12:44:17 2017 -0400
+++ b/tools/effectiveT3/README.rst	Wed May 17 11:16:58 2017 -0400
@@ -98,6 +98,7 @@
         - Minor internal changes to Python script for error reporting & style.
 v0.0.18 - Use ``<command detect_errors="aggressive">`` (internal change only).
         - Single quote command line arguments (internal change only).
+v0.0.19 - Python 3 compatible exception handling.
 ======= ======================================================================
 
 
diff -r d6976a4c055b -r 35c358aa7801 tools/effectiveT3/effectiveT3.py
--- a/tools/effectiveT3/effectiveT3.py	Thu May 11 12:44:17 2017 -0400
+++ b/tools/effectiveT3/effectiveT3.py	Wed May 17 11:16:58 2017 -0400
@@ -21,7 +21,7 @@
 
 if "-v" in sys.argv or "--version" in sys.argv:
     # TODO - Get version of the JAR file dynamically?
-    print("Wrapper v0.0.17, TTSS_GUI-1.0.1.jar")
+    print("Wrapper v0.0.19, TTSS_GUI-1.0.1.jar")
     sys.exit(0)
 
 if len(sys.argv) != 5:
@@ -74,7 +74,7 @@
     # script is killed, so too is the child process.
     try:
         child = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
-    except Exception, err:
+    except Exception as err:
         sys.exit("Error invoking command:\n%s\n\n%s\n" % (" ".join(cmd), err))
     # Use .communicate as can get deadlocks with .wait(),
     stdout, stderr = child.communicate()
diff -r d6976a4c055b -r 35c358aa7801 tools/effectiveT3/effectiveT3.xml
--- a/tools/effectiveT3/effectiveT3.xml	Thu May 11 12:44:17 2017 -0400
+++ b/tools/effectiveT3/effectiveT3.xml	Wed May 17 11:16:58 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="effectiveT3" name="Effective T3" version="0.0.18">
+<tool id="effectiveT3" name="Effective T3" version="0.0.19">
     <description>Find bacterial effectors in protein sequences</description>
     <requirements>
         <requirement type="package" version="1.0.1">effectiveT3</requirement>