comparison tools/effectiveT3/effectiveT3.py @ 27:af14f755c05b draft

planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/effectiveT3 commit 7496128ee9ef800fe780e545d2157da8a4f89d35-dirty

26:340624a47a76

            positive += 1
    return count, positive, errors


def run(cmd):
    # Avoid using shell=True when we call subprocess to ensure if the Python
    # script is killed, so too is the child process.
    try:
        child = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
    except Exception, err:

27:af14f755c05b

            positive += 1
    return count, positive, errors


def run(cmd):
    """Run the command line string via subprocess."""
    # Avoid using shell=True when we call subprocess to ensure if the Python
    # script is killed, so too is the child process.
    try:
        child = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
    except Exception, err: