Mercurial > repos > peterjc > effectivet3
comparison tool-data/effectiveT3.loc.sample @ 1:7479dbb285b5 draft
Uploaded v0.0.10, adds unit test
| author | peterjc |
|---|---|
| date | Wed, 17 Apr 2013 05:25:25 -0400 |
| parents | |
| children | 999776f0aee4 |
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| 0:096088373590 | 1:7479dbb285b5 |
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| 1 # This is a three column tab separated file to define the modules (models) | |
| 2 # for the Effective T3 prediction tool. | |
| 3 # | |
| 4 # Column 1 - Module ID, string that Galaxy will save in its database | |
| 5 # Column 2 - Human readable name, Galaxy will show this in the UI | |
| 6 # Column 3 - Filename, Galaxy will use this when calling the tool | |
| 7 # | |
| 8 #NOTE: In EffectiveT3 v1.0.1, the modules are given as their filename | |
| 9 #(with the JAR extension) but without any path. They are expected to | |
| 10 #be located in a subdirectory called module under the working directory. | |
| 11 #For the galaxy wrapper, we assume this means under the folder where the | |
| 12 #main JAR file is, TTSS_GUI-1.0.1.jar | |
| 13 # | |
| 14 #e.g. | |
| 15 # | |
| 16 # /opt/EffectiveT3/TTSS_GUI-1.0.1.jar | |
| 17 # /opt/EffectiveT3/module/TTSS_STD-1.0.1.jar | |
| 18 # /opt/EffectiveT3/module/TTSS_ANIMAL-1.0.1.jar | |
| 19 # /opt/EffectiveT3/module/TTSS_PLANT-1.0.1.jar | |
| 20 # | |
| 21 #See files ../tools/protein_analysis/effectiveT3.* for more details, | |
| 22 #and http://effectors.org | |
| 23 # | |
| 24 standard Type III Effector prediction with standard set TTSS_STD-1.0.1.jar | |
| 25 animal Type III Effector prediction with animal set TTSS_ANIMAL-1.0.1.jar | |
| 26 plant Type III Effector prediction with plant set TTSS_PLANT-1.0.1.jar |
