comparison tools/effectiveT3/effectiveT3.py @ 34:011cfce866f1 draft

planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/effectiveT3 commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty

33:8db22615d43f

try:
    from shutil import which
except ImportError:
    # Likely running on Python 2, use backport:
    def which(cmd, mode=os.F_OK | os.X_OK, path=None):
        """Given a command, mode, and a PATH string, return the path which
        conforms to the given mode on the PATH, or None if there is no such
        file.
        `mode` defaults to os.F_OK | os.X_OK. `path` defaults to the result
        of os.environ.get("PATH"), or can be overridden with a custom search
        path.
        """

        # Check that a given file can be accessed with the correct mode.
        # Additionally check that `file` is not a directory, as on Windows
        # directories pass the os.access check.
        def _access_check(fn, mode):
            return (os.path.exists(fn) and os.access(fn, mode) and

34:011cfce866f1

try:
    from shutil import which
except ImportError:
    # Likely running on Python 2, use backport:
    def which(cmd, mode=os.F_OK | os.X_OK, path=None):
        """Python implementation of command line tool which.

        Given a command, mode, and a PATH string, return the path which
        conforms to the given mode on the PATH, or None if there is no such
        file.

        `mode` defaults to os.F_OK | os.X_OK. `path` defaults to the result
        of os.environ.get("PATH"), or can be overridden with a custom search
        path.
        """
        # Check that a given file can be accessed with the correct mode.
        # Additionally check that `file` is not a directory, as on Windows
        # directories pass the os.access check.
        def _access_check(fn, mode):
            return (os.path.exists(fn) and os.access(fn, mode) and