Mercurial > repos > peterjc > effectivet3
comparison tools/effectiveT3/effectiveT3.py @ 30:007e86eff414 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/effectiveT3 commit 7ea917a606c9226a0c902504f963577c8986d4a5-dirty
| author | peterjc |
|---|---|
| date | Mon, 22 May 2017 06:33:59 -0400 |
| parents | 35c358aa7801 |
| children | 3ef6c246ccac |
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| 29:35c358aa7801 | 30:007e86eff414 |
|---|---|
| 102 % (os.path.join(effective_t3_dir, "module"), | 102 % (os.path.join(effective_t3_dir, "module"), |
| 103 ", ".join(repr(p) for p in os.listdir(os.path.join(effective_t3_dir, "module"))))) | 103 ", ".join(repr(p) for p in os.listdir(os.path.join(effective_t3_dir, "module"))))) |
| 104 sys.stderr.write("Main JAR was found: %r\n" % effective_t3_jar) | 104 sys.stderr.write("Main JAR was found: %r\n" % effective_t3_jar) |
| 105 sys.exit("Effective T3 model JAR file not found: %r" % effective_t3_model) | 105 sys.exit("Effective T3 model JAR file not found: %r" % effective_t3_model) |
| 106 | 106 |
| 107 # We will have write access whereever the output should be, | 107 # We will have write access wherever the output should be, |
| 108 temp_file = os.path.abspath(tabular_file + ".tmp") | 108 temp_file = os.path.abspath(tabular_file + ".tmp") |
| 109 | 109 |
| 110 # Use absolute paths since will change current directory... | 110 # Use absolute paths since will change current directory... |
| 111 tabular_file = os.path.abspath(tabular_file) | 111 tabular_file = os.path.abspath(tabular_file) |
| 112 fasta_file = os.path.abspath(fasta_file) | 112 fasta_file = os.path.abspath(fasta_file) |