# HG changeset patch # User peterjc # Date 1402657583 14400 # Node ID b7c85bb42d87d187cecccfbc40b99864bd313663 # Parent 6f623a9718f1f394acd57cf8dcd317b758504da4 Uploaded v0.1.0b, fixed typo diff -r 6f623a9718f1 -r b7c85bb42d87 tools/blastxml_to_top_descr/blastxml_to_top_descr.xml --- a/tools/blastxml_to_top_descr/blastxml_to_top_descr.xml Tue May 13 06:32:42 2014 -0400 +++ b/tools/blastxml_to_top_descr/blastxml_to_top_descr.xml Fri Jun 13 07:06:23 2014 -0400 @@ -1,5 +1,5 @@ - Make a table from BLAST XML + Make a table from BLAST output blastxml_to_top_descr.py --version blastxml_to_top_descr.py @@ -72,7 +72,7 @@ formats including text, tabular and a more detailed XML format. You can do a lot of things with tabular files in Galaxy (sorting, filtering, joins, etc), however until BLAST+ 2.2.28 the tabular output never included the -hit descriptions (titles) found in the other output formats +hit descriptions (titles) found in the other output formats. This tool turns a BLAST XML file into a simple tabular file containing one row per query sequence, containing the query identifier and then @@ -82,7 +82,7 @@ This tool can also be used with the tabular output from BLAST+ instead, provided the relevant columns are provided. The default settings will work with the default 25 column extended output from the BLAST+ tools -wrapped in Galaxy. Note if a query has not hits, it does not appear in +wrapped in Galaxy. Note if a query has *no* hits, it does not appear in the BLAST tabular output. **Example Usage** diff -r 6f623a9718f1 -r b7c85bb42d87 tools/blastxml_to_top_descr/repository_dependencies.xml --- a/tools/blastxml_to_top_descr/repository_dependencies.xml Tue May 13 06:32:42 2014 -0400 +++ b/tools/blastxml_to_top_descr/repository_dependencies.xml Fri Jun 13 07:06:23 2014 -0400 @@ -1,4 +1,4 @@ - +