# HG changeset patch
# User peterjc
# Date 1486657359 18000
# Node ID 6ade4e7c63b30d3d71da5a4dc1ebeae94735b804
# Parent  60d0c6c1a71f982ef7de44b359dcfa1a4c630350
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/blastxml_to_top_descr commit 96d587fc6f6cab23c597e88a83daf7eecd0d4162-dirty

diff -r 60d0c6c1a71f -r 6ade4e7c63b3 tools/blastxml_to_top_descr/blastxml_to_top_descr.py
--- a/tools/blastxml_to_top_descr/blastxml_to_top_descr.py	Fri Feb 03 12:38:33 2017 -0500
+++ b/tools/blastxml_to_top_descr/blastxml_to_top_descr.py	Thu Feb 09 11:22:39 2017 -0500
@@ -6,9 +6,11 @@
 
 Assumes the hits are pre-sorted, so "best" 3 hits gives first 3 hits.
 """
+
 import os
+import re
 import sys
-import re
+
 from optparse import OptionParser
 
 if "-v" in sys.argv or "--version" in sys.argv:
@@ -18,7 +20,7 @@
 if sys.version_info[:2] >= (2, 5):
     import xml.etree.cElementTree as ElementTree
 else:
-    from galaxy import eggs
+    from galaxy import eggs  # noqa - ignore flake8 F401
     import pkg_resources
     pkg_resources.require("elementtree")
     from elementtree import ElementTree
@@ -221,6 +223,7 @@
         # Final query
         yield current_query, hit_descrs
 
+
 if options.format == "blastxml":
     hits = blastxml_hits(in_file)
 elif options.format == "tabular":
@@ -238,6 +241,7 @@
     else:
         return descriptions[:topN]
 
+
 count = 0
 if out_file is None:
     outfile = sys.stdout
diff -r 60d0c6c1a71f -r 6ade4e7c63b3 tools/blastxml_to_top_descr/repository_dependencies.xml
--- a/tools/blastxml_to_top_descr/repository_dependencies.xml	Fri Feb 03 12:38:33 2017 -0500
+++ b/tools/blastxml_to_top_descr/repository_dependencies.xml	Thu Feb 09 11:22:39 2017 -0500
@@ -1,4 +1,4 @@
 <?xml version="1.0"?>
 <repositories description="Requires BLAST XML and database datatype definitions.">
-<repository changeset_revision="623a3fbe5340" name="blast_datatypes" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+<repository changeset_revision="310ec0f47485" name="blast_datatypes" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
 </repositories>