# HG changeset patch
# User peterjc
# Date 1486143490 18000
# Node ID 986673e8d32c265e4898adddc0a6224dfdf88edc
# Parent eaabeeb00e10f29150c0b10f0b4d3dbd93c8d053
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/blast_rbh commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
diff -r eaabeeb00e10 -r 986673e8d32c tools/blast_rbh/blast_rbh.py
--- a/tools/blast_rbh/blast_rbh.py Mon Dec 05 13:55:14 2016 -0500
+++ b/tools/blast_rbh/blast_rbh.py Fri Feb 03 12:38:10 2017 -0500
@@ -296,7 +296,8 @@
elif record.id in duplicates:
continue
SeqIO.write(record, handle, "fasta")
- print("%i unique entries; removed %i duplicates leaving %i representative records" % (unique, len(duplicates), len(representatives)))
+ print("%i unique entries; removed %i duplicates leaving %i representative records"
+ % (unique, len(duplicates), len(representatives)))
else:
os.symlink(os.path.abspath(input_fasta), output_fasta)
print("No perfect duplicates in file, %i unique entries" % unique)
@@ -333,7 +334,8 @@
count = 0
outfile = open(out_file, 'w')
outfile.write("#A_id\tB_id\tA_length\tB_length\tA_qcovhsp\tB_qcovhsp\tlength\tpident\tbitscore\n")
-for a, (b, a_score_float, a_score_str, a_identity_str, a_coverage_str, a_qlen, a_length) in best_hits(a_vs_b, self_comparison):
+for a, (b, a_score_float, a_score_str,
+ a_identity_str, a_coverage_str, a_qlen, a_length) in best_hits(a_vs_b, self_comparison):
if b not in best_b_vs_a:
# Match b has no best hit
continue
diff -r eaabeeb00e10 -r 986673e8d32c tools/blast_rbh/tool_dependencies.xml
--- a/tools/blast_rbh/tool_dependencies.xml Mon Dec 05 13:55:14 2016 -0500
+++ b/tools/blast_rbh/tool_dependencies.xml Fri Feb 03 12:38:10 2017 -0500
@@ -4,6 +4,6 @@
-
+