Mercurial > repos > peterjc > blast_rbh
diff tools/blast_rbh/README.rst @ 21:b41f8c43705e draft
v0.1.7 - Updated citation & misc internal changes
author | peterjc |
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date | Fri, 04 Sep 2015 07:05:56 -0400 |
parents | e8f8c580bcca |
children | 75ab3e2cfa0e |
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--- a/tools/blast_rbh/README.rst Fri May 15 05:47:40 2015 -0400 +++ b/tools/blast_rbh/README.rst Fri Sep 04 07:05:56 2015 -0400 @@ -19,16 +19,17 @@ Citation ======== -Please cite the following paper (currently available as a preprint): +Please cite the following paper: NCBI BLAST+ integrated into Galaxy. P.J.A. Cock, J.M. Chilton, B. Gruening, J.E. Johnson, N. Soranzo -bioRxiv DOI: http://dx.doi.org/10.1101/014043 (preprint) +*GigaScience* 2015, 4:39 +DOI: http://dx.doi.org/10.1186/s13742-015-0080-7 You should also cite the NCBI BLAST+ tools: BLAST+: architecture and applications. -C. Camacho et al. BMC Bioinformatics 2009, 10:421. +C. Camacho et al. *BMC Bioinformatics* 2009, 10:421. DOI: http://dx.doi.org/10.1186/1471-2105-10-421 @@ -82,6 +83,7 @@ - Added "NCBI BLAST+ integrated into Galaxy" preprint citation. v0.1.7 - Reorder XML elements (internal change only). - Planemo for Tool Shed upload (``.shed.yml``, internal change only). + - Updated citation information with GigaScience paper. ======= ====================================================================== @@ -95,12 +97,12 @@ Planemo commands (which requires you have set your Tool Shed access details in ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: - $ planemo shed_upload --shed_target testtoolshed --check_diff ~/repositories/galaxy_blast/tools/blast_rbh/ + $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/galaxy_blast/tools/blast_rbh/ ... or:: - $ planemo shed_upload --shed_target toolshed --check_diff ~/repositories/galaxy_blast/tools/blast_rbh/ + $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/galaxy_blast/tools/blast_rbh/ ... To just build and check the tar ball, use::