Mercurial > repos > peterjc > blast_rbh
diff tools/blast_rbh/blast_rbh.xml @ 33:692366540172 draft
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/blast_rbh commit 21f6d9932d322034e4cea5fee23b24bf0b1e1e85-dirty
author | peterjc |
---|---|
date | Thu, 18 May 2017 12:43:55 -0400 |
parents | b662383a4bdc |
children | 5c78f5e6cdf2 |
line wrap: on
line diff
--- a/tools/blast_rbh/blast_rbh.xml Thu May 18 07:39:37 2017 -0400 +++ b/tools/blast_rbh/blast_rbh.xml Thu May 18 12:43:55 2017 -0400 @@ -1,19 +1,14 @@ -<tool id="blast_reciprocal_best_hits" name="BLAST Reciprocal Best Hits (RBH)" version="0.1.11"> +<tool id="blast_reciprocal_best_hits" name="BLAST Reciprocal Best Hits (RBH)" version="0.1.12"> <description>from two FASTA files</description> <requirements> <requirement type="package" version="1.67">biopython</requirement> <requirement type="package" version="2.5.0">blast</requirement> </requirements> - <stdio> - <!-- Anything other than zero is an error --> - <exit_code range="1:" /> - <exit_code range=":-1" /> - </stdio> - <version_command interpreter="python"> -blast_rbh.py --version + <version_command> +python $__tool_directory__/blast_rbh.py --version </version_command> - <command interpreter="python"> -blast_rbh.py "$fasta_a" "$fasta_b" + <command detect_errors="aggressive"> +python $__tool_directory__/blast_rbh.py '$fasta_a' '$fasta_b' -a $seq.dbtype #if $seq.dbtype=="nucl" -t $seq.nucl_type @@ -23,7 +18,7 @@ $make_nr -i $identity -c $q_cover --o "$output" +-o '$output' </command> <inputs> <!-- Galaxy does not have sub-types for protein vs nucletide FASTA -->