comparison tools/blast_rbh/blast_rbh.xml @ 35:5c78f5e6cdf2 draft

planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/blast_rbh commit 1b9ec80b23b7fc9d3ed95afba3bc3b57dc3f47c2-dirty

34:362c62ef2feb

coverage threshold or similiar. See:

Punta and Ofran (2008) The Rough Guide to In Silico Function Prediction,
or How To Use Sequence and Structure Information To Predict Protein
Function. PLoS Comput Biol 4(10): e1000160.
http://dx.doi.org/10.1371/journal.pcbi.1000160

The defaults are to require 70% sequence identity over the aligned region
(using ``pident`` in the BLAST+ tabular output), and that the HSP alignment
covers at least 50% of the query sequence (using ``qcovhsp`` in the BLAST+
tabular output).

Please cite:

P.J.A. Cock, J.M. Chilton, B. Gruening, J.E. Johnson, N. Soranzo (2015).
NCBI BLAST+ integrated into Galaxy.
*GigaScience* 4:39
http://dx.doi.org/10.1186/s13742-015-0080-7

Christiam Camacho et al. (2009).
BLAST+: architecture and applications.
*BMC Bioinformatics* 15;10:421.
http://dx.doi.org/10.1186/1471-2105-10-421

This wrapper is available to install into other Galaxy Instances via the Galaxy
Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/blast_rbh
    </help>
    <citations>

35:5c78f5e6cdf2

coverage threshold or similiar. See:

Punta and Ofran (2008) The Rough Guide to In Silico Function Prediction,
or How To Use Sequence and Structure Information To Predict Protein
Function. PLoS Comput Biol 4(10): e1000160.
https://doi.org/10.1371/journal.pcbi.1000160

The defaults are to require 70% sequence identity over the aligned region
(using ``pident`` in the BLAST+ tabular output), and that the HSP alignment
covers at least 50% of the query sequence (using ``qcovhsp`` in the BLAST+
tabular output).

Please cite:

P.J.A. Cock, J.M. Chilton, B. Gruening, J.E. Johnson, N. Soranzo (2015).
NCBI BLAST+ integrated into Galaxy.
*GigaScience* 4:39
https://doi.org/10.1186/s13742-015-0080-7

Christiam Camacho et al. (2009).
BLAST+: architecture and applications.
*BMC Bioinformatics* 15;10:421.
https://doi.org/10.1186/1471-2105-10-421

This wrapper is available to install into other Galaxy Instances via the Galaxy
Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/blast_rbh
    </help>
    <citations>