Mercurial > repos > peterjc > blast2go

annotate tool-data/blast2go.loc.sample @ 9:23bce1e3004f draft

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Uploaded v0.0.8 preview 5, current directory not what I expected during install
author peterjc
date Mon, 20 May 2013 06:59:22 -0400
parents 2921c0f29c85
children 7ed4187fc07c
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5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
1 # This is a three column tab separated file to define the properties
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
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2 # file (settings) to be offered for Blast2GO for Pipelines (b2g4pipe).
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
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3 #
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
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4 # Column 1 - ID, string that Galaxy will save in its database
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
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5 # Column 2 - Human readable name, Galaxy will show this in the UI
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
6 # Column 3 - Filename, Galaxy will use this when calling the tool
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
7 #
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
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8 # Probably the most important setting in the properties file is the
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2921c0f29c85 Uploaded v0.0.8 preview 1, attempt auto-install and unit test.
peterjc
parents: 4
diff changeset
9 # Blast2GO database to use. Currently b2g4pipe v2.5 ships with an
2921c0f29c85 Uploaded v0.0.8 preview 1, attempt auto-install and unit test.
peterjc
parents: 4
diff changeset
10 # old configuration so consult http://www.blast2go.com for the latest
2921c0f29c85 Uploaded v0.0.8 preview 1, attempt auto-install and unit test.
peterjc
parents: 4
diff changeset
11 # public database they host in Spain (or find this by running the GUI
2921c0f29c85 Uploaded v0.0.8 preview 1, attempt auto-install and unit test.
peterjc
parents: 4
diff changeset
12 # version of Blast2GO via Java Web Start under the menu entry "Tools",
2921c0f29c85 Uploaded v0.0.8 preview 1, attempt auto-install and unit test.
peterjc
parents: 4
diff changeset
13 # "General Settings", "DataAccess setting"). We also strongly recommend
2
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
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14 # configuring a local Blast2GO database.
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
15 #
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d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
16 # The property filenames can be fullied qualified paths like
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
17 # /opt/b2g4pipe/Spain_2012_August.properties or provided they are
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
18 # in the same folder as the Blast2GO JAR file, just the filename
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
19 # like Spain_2012_August.properties instead. This is intended to
5
2921c0f29c85 Uploaded v0.0.8 preview 1, attempt auto-install and unit test.
peterjc
parents: 4
diff changeset
20 # make migrating between future versions of Blast2GO easier (as the
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d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
21 # property files change between versions), and simpler overall.
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
22 #
5
2921c0f29c85 Uploaded v0.0.8 preview 1, attempt auto-install and unit test.
peterjc
parents: 4
diff changeset
23 #Local_2011_May Local database (May 2011) Local_2011_May.properties
2921c0f29c85 Uploaded v0.0.8 preview 1, attempt auto-install and unit test.
peterjc
parents: 4
diff changeset
24 #Spain_2010_May Database in Spain (May 2010) Spain_2010_May.properties
2921c0f29c85 Uploaded v0.0.8 preview 1, attempt auto-install and unit test.
peterjc
parents: 4
diff changeset
25 #Spain_2011_June Database in Spain (June 2011) Spain_2011_June.properties
2921c0f29c85 Uploaded v0.0.8 preview 1, attempt auto-install and unit test.
peterjc
parents: 4
diff changeset
26 #Spain_2012_August Database in Spain (August 2012) Spain_2012_August.properties
2921c0f29c85 Uploaded v0.0.8 preview 1, attempt auto-install and unit test.
peterjc
parents: 4
diff changeset
27 default Default settings b2gPipe.properties