Mercurial > repos > peterjc > align_back_trans
changeset 20:633f84270033 draft
v0.0.10 removed unused reference to muscle format
| author | peterjc |
|---|---|
| date | Mon, 21 Aug 2017 06:25:24 -0400 |
| parents | 80e38b710ae9 |
| children | 5e2bb75817e2 |
| files | tools/align_back_trans/README.rst tools/align_back_trans/align_back_trans.xml |
| diffstat | 2 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/tools/align_back_trans/README.rst Tue May 16 09:39:17 2017 -0400 +++ b/tools/align_back_trans/README.rst Mon Aug 21 06:25:24 2017 -0400 @@ -80,6 +80,8 @@ - Use ``<command detect_errors="aggressive">`` (internal change only). - Single quote command line arguments (internal change only). v0.0.9 - Python 3 compatible print function. +v0.0.10 - Remove unused reference to ``muscle`` format in wrapper, reported by + Björn Grüning (internal change only). ======= ======================================================================
--- a/tools/align_back_trans/align_back_trans.xml Tue May 16 09:39:17 2017 -0400 +++ b/tools/align_back_trans/align_back_trans.xml Mon Aug 21 06:25:24 2017 -0400 @@ -1,4 +1,4 @@ -<tool id="align_back_trans" name="Thread nucleotides onto a protein alignment (back-translation)" version="0.0.9"> +<tool id="align_back_trans" name="Thread nucleotides onto a protein alignment (back-translation)" version="0.0.10"> <description>Gives a codon aware alignment</description> <requirements> <requirement type="package" version="1.67">biopython</requirement> @@ -10,7 +10,7 @@ python $__tool_directory__/align_back_trans.py $prot_align.ext '$prot_align' '$nuc_file' '$out_nuc_align' '$table' </command> <inputs> - <param name="prot_align" type="data" format="fasta,muscle,clustal" label="Aligned protein file" help="Mutliple sequence file in FASTA, ClustalW or PHYLIP format." /> + <param name="prot_align" type="data" format="fasta,clustal" label="Aligned protein file" help="Mutliple sequence file in FASTA, ClustalW or PHYLIP format." /> <param name="table" type="select" label="Genetic code" help="Tables from the NCBI, these determine the start and stop codons"> <option value="1">1. Standard</option> <option value="2">2. Vertebrate Mitochondrial</option>