view cluster.tools/heatmap.from.cluster.result.py @ 5:cbc3ecce98ee draft

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#!/usr/bin/env python
import os
import sys
import subprocess

select_script_path = os.path.join(os.path.dirname(os.path.realpath(__file__)), "heatmap.from.cluster.result.R")
survival_script_path = os.path.join(os.path.dirname(os.path.realpath(__file__)), "gen.survival.curves.R")

cmd_args = [ "Rscript", select_script_path ] + sys.argv[1:] + [ "-z", survival_script_path ]

print cmd_args

proc = subprocess.Popen( cmd_args, stderr=subprocess.PIPE, stdout=subprocess.PIPE )
(stdoutdata, stderrdata) = proc.communicate()
if proc.returncode:
	sys.stderr.write(stderrdata)
sys.stdout.write(stdoutdata)