view cluster.tools/extract.TCGA.survival.data.xml @ 5:cbc3ecce98ee draft

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<tool id="extract_TCGA_survival_data" name="Extract TCGA Survival Data" force_history_refresh="True">
    <command interpreter="python">extract.TCGA.survival.data.py
-d $dataset
-o ${output}

</command>
    <inputs>
    	<param name="dataset" type="data" format='tabular' label="Raw TCGA Clinical Data"/>
    </inputs>
    <outputs>
        <data format="tabular" name="output" label="TCGA Survival Data"/>
    </outputs>
<help>
.. class:: infomark
     
**Format Raw TCGA Clinical Data** - Tool to convert a raw clinical TCGA data file into a the format expected by the Survival Analysis tools

**OUTPUT:**  A new clinical data file that is a 2 column, tab-delimited file of the format that is expected by the Survival Analysis tools

</help>
</tool>