view cluster.tools/remove.degenerate.values.xml @ 3:563832f48c08 draft

Uploaded

<tool id="remove_degenerate_values" name="Remove Degenerate Values" force_history_refresh="True">
    <command interpreter="python">remove.degenerate.values.py
-d $dataset -r ${replacement_value}
-o ${output}

</command>
    <inputs>
    	<param name="dataset" type="data" format='tabular' label="Matrix with Degenerate Values"/>
	<param name="replacement_value" type="text" label="Value used to replace NaNs and Infs in matrix" value="NA" />
    </inputs>
    <outputs>
        <data format="tabular" name="output" label="Matrix with degenerate values (NaNs and Infs) replaced"/>
    </outputs>
<help>
.. class:: infomark
     
**Remove Degenerate Values** - Tool to replace 'degenerate' values (such as NaNs and Infs) from a data matrix with a user-specified value.  **Note**, NAs are not degenerate values.

**OUTPUT:**  A new matrix without degenerate values

----

**Parameters**

- **Matrix with Degenerate Values** Input matrix that potentially contains degenerate values

- **Value used to replace NaNs and Infs in matrix** Single value that is used to replace the degenerate values

</help>
</tool>