diff cluster.tools/extract.TCGA.survival.data.xml @ 1:dddfeedb85af draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cluster.tools/extract.TCGA.survival.data.xml	Fri Mar 01 10:16:53 2013 -0500
@@ -0,0 +1,21 @@
+<tool id="extract_TCGA_survival_data" name="Extract TCGA Survival Data" force_history_refresh="True">
+    <command interpreter="python">extract.TCGA.survival.data.py
+-d $dataset
+-o ${output}
+
+</command>
+    <inputs>
+    	<param name="dataset" type="data" format='tabular' label="Raw Clinical Data"/>
+    </inputs>
+    <outputs>
+        <data format="tabular" name="output" label="Formatted Clinical Data"/>
+    </outputs>
+<help>
+.. class:: infomark
+     
+**Format Raw TCGA Clinical Data** - Tool to convert a raw clinical TCGA data file into a the format expected by the Survival Analysis tools
+
+**OUTPUT:**  A new clinical data file that is a 2 column, tab-delimited file of the format that is expected by the Survival Analysis tools
+
+</help>
+</tool>