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comparison cluster.tools/format.raw.TCGA.RNASeq.data.xml @ 8:a58527c632b7 draft

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author peter-waltman
date Mon, 11 Mar 2013 16:31:29 -0400
parents 563832f48c08
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7:2efa1a284546 8:a58527c632b7
24 <help> 24 <help>
25 .. class:: infomark 25 .. class:: infomark
26 26
27 **Format Raw TCGA RNASeq Data** - Tool to convert a raw RNASeq TCGA data file (a file from either Synapse or Firehose) into a the format expected by the Survival Analysis tools 27 **Format Raw TCGA RNASeq Data** - Tool to convert a raw RNASeq TCGA data file (a file from either Synapse or Firehose) into a the format expected by the Survival Analysis tools
28 28
29 **Log-transform data?** -Specify whether or not to log-transform the data matrix. To avoid numeric underflow, this will use log(x+1), where x is the value of the RNASeq data 29 **Log-transform data?** - Specify whether or not to log-transform the data matrix. To avoid numeric underflow, this will use log(x+1), where x is the value of the RNASeq data
30 30
31 **OUTPUT:** A new tab-delimited file containing the log-transformed RNASeq data 31 **OUTPUT:** A new tab-delimited file containing the log-transformed RNASeq data
32 32
33 </help> 33 </help>
34 </tool> 34 </tool>