comparison cluster.tools/rnaseq.feature.selection.xml @ 3:563832f48c08 draft

Uploaded

2:b8f262149ee2

<tool id="rnaseq_feature_selection" name="RNASeq Feature Selection" force_history_refresh="True">
    <command interpreter="python">rnaseq.feature.selection.py
-d $dataset 
-z ${z_transform}
-m ${var_method} 
-p ${perc_pass} 

	  <option value="sd">Standard Deviation (SD)</option>
    	</param>
	<param name="perc_pass" type="float" label="Total number of features to keep" help="Use value >= 1 to indicate exact number of genes. Use value in 0-1 range to specify percentage" value="1500"/>
    </inputs>
    <outputs>
        <data format="tabular" name="output" label="Filtered RNASeqs"/>
    </outputs>
<help>
.. class:: infomark
     
**RNASeq Feature Selection** - Tool to filter an RNASeq matrix to select the most variant features

3:563832f48c08

<tool id="rnaseq_feature_selection" name="RNASeq Feature Selection (High Variance Filter)" force_history_refresh="True">
    <command interpreter="python">rnaseq.feature.selection.py
-d $dataset 
-z ${z_transform}
-m ${var_method} 
-p ${perc_pass} 

	  <option value="sd">Standard Deviation (SD)</option>
    	</param>
	<param name="perc_pass" type="float" label="Total number of features to keep" help="Use value >= 1 to indicate exact number of genes. Use value in 0-1 range to specify percentage" value="1500"/>
    </inputs>
    <outputs>
        <data format="tabular" name="output" label="High Variance Filtered RNASeq Data"/>
    </outputs>
<help>
.. class:: infomark
     
**RNASeq Feature Selection** - Tool to filter an RNASeq matrix to select the most variant features