comparison cluster.tools/remove.tcga.normals.xml @ 0:0decf3fd54bc draft

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0:0decf3fd54bc

<tool id="remove_tcga_normal_samples" name="Remove TGCA Normal Samples" force_history_refresh="True">
    <command interpreter="python">remove.tcga.normals.py
-d $dataset
-o ${output}

</command>
    <inputs>
    	<param name="dataset" type="data" format='tabular' label="Matrix containing TCGA Normal Samples"/>
    </inputs>
    <outputs>
        <data format="tabular" name="output" label="Tumor Sample Matrix"/>
    </outputs>
<help>
.. class:: infomark
     
**Remove Normal Samples** - Tool to remove the normal samples from a matrix **(ASSUMES samples are in the columns of matrix)**

**OUTPUT:**  A new matrix without normal samples

----

**INPUT**

- **Matrix that contains normal samples** Input matrix that potentially contains normal samples 


</help>
</tool>