Mercurial > repos > peter-waltman > ucsc_cluster_tools

diff cluster.tools/fix.and.merge.TCGA.sample.IDs.py @ 2:b442996b66ae draft

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author peter-waltman
date Wed, 27 Feb 2013 20:17:04 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cluster.tools/fix.and.merge.TCGA.sample.IDs.py	Wed Feb 27 20:17:04 2013 -0500
@@ -0,0 +1,14 @@
+#!/usr/bin/env python
+import os
+import sys
+import subprocess
+
+select_script_path = os.path.join(os.path.dirname(os.path.realpath(__file__)), "fix.and.merge.TCGA.sample.IDs.R")
+
+cmd_args = [ "Rscript", select_script_path ] + sys.argv[1:] 
+
+proc = subprocess.Popen( cmd_args, stderr=subprocess.PIPE, stdout=subprocess.PIPE )
+(stdoutdata, stderrdata) = proc.communicate()
+if proc.returncode:
+	sys.stderr.write(stderrdata)
+sys.stdout.write(stdoutdata)