Mercurial > repos > perssond > ashlar
changeset 2:f848fc5ca0ae draft default tip
"planemo upload for repository https://github.com/ohsu-comp-bio/ashlar commit 27f0c9be58e9e5aecc69067d0e60b5cb945de4b2"
author | perssond |
---|---|
date | Mon, 01 Mar 2021 22:20:14 +0000 |
parents | 999dc0ca077b |
children | |
files | ashlar.xml |
diffstat | 1 files changed, 16 insertions(+), 2 deletions(-) [+] |
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--- a/ashlar.xml Wed Jan 06 18:34:34 2021 +0000 +++ b/ashlar.xml Mon Mar 01 22:20:14 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="ashlar" name="ASHLAR" version="@VERSION@.5" profile="17.09"> +<tool id="ashlar" name="ASHLAR" version="@VERSION@.6" profile="17.09"> <description>Alignment by Simultaneous Harmonization of Layer/Adjacency Registration</description> <macros> <import>macros.xml</import> @@ -44,10 +44,20 @@ #if $flip_x --flip-x #end if + #if $flip_y --flip-y #end if + -c $adv.align_channel + + #if $adv.filter_sigma + --filter-sigma $adv.filter_sigma + #end if + + #if $adv.tile_size + --tile-size $adv.tile_size + #end if --ffp #for $ffp in $lffp: @@ -103,8 +113,12 @@ </when> <when value="dont_upgrade"> </when> - </conditional> + <section name="adv" title="Advanced Options" expanded="false"> + <param name="align_channel" type="integer" value="0" label="Align Channel Number"/> + <param name="filter_sigma" type="float" optional="true" label="Sigma"/> + <param name="tile_size" type="integer" optional="true" label="Cyto Mask Channel"/> + </section> </inputs> <outputs>