# HG changeset patch
# User pavanvidem
# Date 1432642543 14400
# Node ID 9e93f1274d6f1141f112751e646eeae2a952a436
# Parent  2c55a7e105bd55f36674a23f3a03d752bb811ce6
Uploaded

diff -r 2c55a7e105bd -r 9e93f1274d6f tool_dependencies.xml
--- a/tool_dependencies.xml	Tue May 26 06:19:12 2015 -0400
+++ b/tool_dependencies.xml	Tue May 26 08:15:43 2015 -0400
@@ -3,8 +3,8 @@
     <package name="R" version="3.1.0">
         <repository changeset_revision="cfa09c247b6e" name="package_r_3_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="deseq2" version="1.2.10">
-        <repository changeset_revision="97afd1582a0e" name="package_deseq2_1_2_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="deseq2" version="1.6.1">
+        <repository changeset_revision="5beee6b62be7" name="package_deseq2_1_6_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="diffbind" version="1.14.4">
         <install version="1.0">
@@ -13,26 +13,13 @@
                     <repository changeset_revision="cfa09c247b6e" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="R" version="3.1.0" />
                     </repository>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/IRanges_1.20.6.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/XVector_0.2.0.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/limma_3.18.9.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gtools_3.1.1.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gdata_2.13.2.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/bitops_1.0-6.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/caTools_1.16.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Biostrings_2.30.1.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/GenomicRanges_1.14.4.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/RColorBrewer_1.0-5.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/amap_0.8-7.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/edgeR_3.4.2.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gplots_2.12.1.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/zlibbioc_1.8.0.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Rsamtools_1.14.2.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/getopt_1.20.0.tar.gz</package>
-                        <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomeInfoDb_1.4.0.tar.gz</package>
                         <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.4.1.tar.gz</package>
-                        <package>http://cran.r-project.org/src/contrib/locfit_1.5-9.1.tar.gz</package>
-                        <package>http://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.2.2.tar.gz</package>
                         <package>http://bioconductor.org/packages/release/bioc/src/contrib/ShortRead_1.26.0.tar.gz</package>
                         <package>http://bioconductor.org/packages/release/bioc/src/contrib/systemPipeR_1.2.1.tar.gz</package>
                         <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/DiffBind_1.14.4.tar.gz</package>