# HG changeset patch # User pavanvidem # Date 1441013238 14400 # Node ID d9d8a26d80bfdce754fb1cec3270591dbaadfe7c # Parent 56177132cee2ae596ad2c7e8d9762ea1d2d8d91a Uploaded diff -r 56177132cee2 -r d9d8a26d80bf tool_dependencies.xml --- a/tool_dependencies.xml Mon Aug 31 05:25:40 2015 -0400 +++ b/tool_dependencies.xml Mon Aug 31 05:27:18 2015 -0400 @@ -10,66 +10,66 @@ - http://cran.rstudio.com/src/contrib/lambda.r_1.1.7.tar.gz - http://cran.rstudio.com/src/contrib/futile.options_1.0.0.tar.gz - http://cran.rstudio.com/src/contrib/futile.logger_1.4.1.tar.gz - http://cran.rstudio.com/src/contrib/snow_0.3-13.tar.gz - http://bioarchive.galaxyproject.org/BiocParallel_1.2.20.tar.gz - http://bioarchive.galaxyproject.org/BiocGenerics_0.14.0.tar.gz - http://bioarchive.galaxyproject.org/Biobase_2.28.0.tar.gz - http://bioarchive.galaxyproject.org/S4Vectors_0.6.3.tar.gz - http://bioarchive.galaxyproject.org/IRanges_2.2.7.tar.gz - http://bioarchive.galaxyproject.org/GenomeInfoDb_1.4.2.tar.gz - http://bioarchive.galaxyproject.org/XVector_0.8.0.tar.gz - http://bioarchive.galaxyproject.org/GenomicRanges_1.20.5.tar.gz - http://cran.rstudio.com/src/contrib/Rcpp_0.12.0.tar.gz - http://cran.rstudio.com/src/contrib/RcppArmadillo_0.5.400.2.0.tar.gz - http://cran.rstudio.com/src/contrib/DBI_0.3.1.tar.gz - http://cran.rstudio.com/src/contrib/RSQLite_1.0.0.tar.gz - http://bioarchive.galaxyproject.org/AnnotationDbi_1.30.1.tar.gz - http://cran.rstudio.com/src/contrib/XML_3.98-1.3.tar.gz - http://cran.rstudio.com/src/contrib/xtable_1.7-4.tar.gz - http://bioarchive.galaxyproject.org/annotate_1.46.1.tar.gz - http://cran.rstudio.com/src/contrib/survival_2.38-3.tar.gz - http://bioarchive.galaxyproject.org/genefilter_1.50.0.tar.gz - http://cran.rstudio.com/src/contrib/lattice_0.20-33.tar.gz - http://cran.rstudio.com/src/contrib/locfit_1.5-9.1.tar.gz - http://cran.rstudio.com/src/contrib/RColorBrewer_1.1-2.tar.gz - http://bioarchive.galaxyproject.org/geneplotter_1.46.0.tar.gz - http://cran.rstudio.com/src/contrib/plyr_1.8.3.tar.gz - http://cran.rstudio.com/src/contrib/digest_0.6.8.tar.gz - http://cran.rstudio.com/src/contrib/gtable_0.1.2.tar.gz - http://cran.rstudio.com/src/contrib/stringi_0.5-5.tar.gz - http://cran.rstudio.com/src/contrib/magrittr_1.5.tar.gz - http://cran.rstudio.com/src/contrib/stringr_1.0.0.tar.gz - http://cran.rstudio.com/src/contrib/reshape2_1.4.1.tar.gz - http://cran.rstudio.com/src/contrib/dichromat_2.0-0.tar.gz - http://cran.rstudio.com/src/contrib/colorspace_1.2-6.tar.gz - http://cran.rstudio.com/src/contrib/munsell_0.4.2.tar.gz - http://cran.rstudio.com/src/contrib/labeling_0.3.tar.gz - http://cran.rstudio.com/src/contrib/scales_0.3.0.tar.gz - http://cran.rstudio.com/src/contrib/proto_0.3-10.tar.gz - http://cran.rstudio.com/src/contrib/MASS_7.3-43.tar.gz - http://cran.rstudio.com/src/contrib/ggplot2_1.0.1.tar.gz - http://cran.rstudio.com/src/contrib/Formula_1.2-1.tar.gz - http://cran.rstudio.com/src/contrib/latticeExtra_0.6-26.tar.gz - http://cran.rstudio.com/src/contrib/cluster_2.0.3.tar.gz - http://cran.rstudio.com/src/contrib/rpart_4.1-10.tar.gz - http://cran.rstudio.com/src/contrib/nnet_7.3-10.tar.gz - http://cran.rstudio.com/src/contrib/acepack_1.3-3.3.tar.gz - http://cran.rstudio.com/src/contrib/foreign_0.8-66.tar.gz - http://cran.rstudio.com/src/contrib/gridExtra_2.0.0.tar.gz - http://cran.rstudio.com/src/contrib/Hmisc_3.16-0.tar.gz - http://bioarchive.galaxyproject.org/DESeq2_1.8.1.tar.gz - http://cran.rstudio.com/src/contrib/bitops_1.0-6.tar.gz - http://cran.rstudio.com/src/contrib/RCurl_1.95-4.7.tar.gz - http://bioarchive.galaxyproject.org/biomaRt_2.24.0.tar.gz - http://cran.rstudio.com/src/contrib/hwriter_1.3.2.tar.gz - http://bioarchive.galaxyproject.org/zlibbioc_1.14.0.tar.gz - http://bioarchive.galaxyproject.org/Biostrings_2.36.4.tar.gz - http://bioarchive.galaxyproject.org/Rsamtools_1.20.4.tar.gz - http://cran.rstudio.com/src/contrib/statmod_1.4.21.tar.gz - http://bioarchive.galaxyproject.org/DEXSeq_1.14.2.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/lambda.r_1.1.7.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/futile.options_1.0.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/futile.logger_1.4.1.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/snow_0.3-13.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/BiocParallel_1.2.20.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/BiocGenerics_0.14.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Biobase_2.28.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/S4Vectors_0.6.3.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/IRanges_2.2.7.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/GenomeInfoDb_1.4.2.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/XVector_0.8.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/GenomicRanges_1.20.5.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Rcpp_0.12.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RcppArmadillo_0.5.400.2.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/DBI_0.3.1.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RSQLite_1.0.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/AnnotationDbi_1.30.1.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/XML_3.98-1.3.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/xtable_1.7-4.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/annotate_1.46.1.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/survival_2.38-3.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/genefilter_1.50.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/lattice_0.20-33.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/locfit_1.5-9.1.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RColorBrewer_1.1-2.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/geneplotter_1.46.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/plyr_1.8.3.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/digest_0.6.8.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/gtable_0.1.2.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/stringi_0.5-5.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/magrittr_1.5.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/stringr_1.0.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/reshape2_1.4.1.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/dichromat_2.0-0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/colorspace_1.2-6.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/munsell_0.4.2.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/labeling_0.3.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/scales_0.3.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/proto_0.3-10.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/MASS_7.3-43.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/ggplot2_1.0.1.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Formula_1.2-1.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/latticeExtra_0.6-26.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/cluster_2.0.3.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/rpart_4.1-10.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/nnet_7.3-10.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/acepack_1.3-3.3.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/foreign_0.8-66.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/gridExtra_2.0.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Hmisc_3.16-0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/DESeq2_1.8.1.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/bitops_1.0-6.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RCurl_1.95-4.7.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/biomaRt_2.24.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/hwriter_1.3.2.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/zlibbioc_1.14.0.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Biostrings_2.36.4.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Rsamtools_1.20.4.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/statmod_1.4.21.tar.gz + https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/DEXSeq_1.14.2.tar.gz