view dexseq/tool_dependancy.xml @ 0:7604d324c5aa draft

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<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="3.1.2">
        <repository name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="libxml2" version="2.9.1">
        <repository name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="deseq2" version="1.6.1">
        <repository name="package_deseq2_1_6_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="dexseq" version="1.14.1">
        <install version="1.0">
            <actions>
                <action type="setup_r_environment">
                    <repository name="package_r_3_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="R" version="3.1.2" />
                    </repository>
                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/Biostrings_2.36.4.tar.gz</package>
                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/hwriter_1.3.2.tar.gz</package>
                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/statmod_1.4.21.tar.gz</package>
                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/biomaRt_2.24.0.tar.gz</package>
                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/Rsamtools_1.20.4.tar.gz</package>
                </action>
            </actions>
        </install>
        <readme>
        Differential exon usage based on the negative binomial distribution.
        </readme>
    </package>
</tool_dependency>