Mercurial > repos > pavanvidem > dexseq
view tool_dependencies.xml @ 7:3969f6f77f61 draft
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author | pavanvidem |
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date | Fri, 28 Aug 2015 11:25:25 -0400 |
parents | 1987b22e6eff |
children | b3101052013f |
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<?xml version="1.0"?> <tool_dependency> <package name="R" version="3.1.0"> <repository changeset_revision="613002a3ad4c" name="package_r_3_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="libxml2" version="2.9.1"> <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="deseq2" version="1.6.1"> <repository changeset_revision="5beee6b62be7" name="package_deseq2_1_6_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="dexseq" version="1.14.1"> <install version="1.0"> <actions> <action type="setup_r_environment"> <repository changeset_revision="613002a3ad4c" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="R" version="3.1.0" /> </repository> <repository changeset_revision="5beee6b62be7" name="package_deseq2_1_6_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="deseq2" version="1.6.1" /> </repository> <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/bitops_1.0-6.tar.gz</package> <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/RCurl_1.95-4.7.tar.gz</package> <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/zlibbioc_1.14.0.tar.gz</package> <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/hwriter_1.3.2.tar.gz</package> <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/statmod_1.4.21.tar.gz</package> <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/Biostrings_2.36.4.tar.gz</package> <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/biomaRt_2.24.0.tar.gz</package> <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/Rsamtools_1.20.4.tar.gz</package> </action> </actions> </install> <readme> Differential exon usage based on the negative binomial distribution. </readme> </package> </tool_dependency>