Mercurial > repos > pavanvidem > dexseq

diff dexseq.xml @ 23:f5cc1f2a6e96 draft

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Uploaded
author pavanvidem
date Wed, 23 Sep 2015 05:59:34 -0400
parents 71cb8c5ae8bd
children abf8b6260cae
line wrap: on
line diff
--- a/dexseq.xml	Tue Sep 22 11:24:46 2015 -0400
+++ b/dexseq.xml	Wed Sep 23 05:59:34 2015 -0400
@@ -3,7 +3,7 @@
     <requirements>
         <requirement type="package" version="3.2.0">R</requirement>
         <requirement type="package" version="4.0.3">tiff</requirement>
-        <requirement type="package" version="1.14.2">DEXSeq</requirement>
+        <requirement type="package" version="1.14.2">dexseq</requirement>
     </requirements>
     <code file="dexseq_helper.py" />
     <command>
@@ -83,7 +83,7 @@
     <code file="dexseq_helper.py" />
     <tests>
         <test>
-            <param name="gtf" value="flattened.filtered.gtf" ftype="bed"/>
+            <param name="gtf" value="dexseq.gtf" ftype="bed"/>
             <repeat name="rep_factorName">
                 <param name="factorName" value="condition" ftype="bed"/>
                 <repeat name="rep_factorLevel">
@@ -148,7 +148,7 @@
             </repeat>
             <param name="report" type="boolean" value="False"/>
             <param name="fdr_cutoff" value="0.05"/>
-            <output name="dexseq_out" file="DEXSeq_result_file.tabular" ftype="tabular"/>
+            <output name="dexseq_out" file="dexseq_result.tabular" ftype="tabular"/>
         </test>
     </tests>
     <help>