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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="3.1.2">
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4 <repository name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="libxml2" version="2.9.1">
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7 <repository name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="deseq2" version="1.6.1">
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10 <repository name="package_deseq2_1_6_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="dexseq" version="1.14.1">
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13 <install version="1.0">
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14 <actions>
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15 <action type="setup_r_environment">
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16 <repository name="package_r_3_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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17 <package name="R" version="3.1.2" />
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18 </repository>
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19 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/Biostrings_2.36.4.tar.gz</package>
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20 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/hwriter_1.3.2.tar.gz</package>
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21 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/statmod_1.4.21.tar.gz</package>
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22 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/biomaRt_2.24.0.tar.gz</package>
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23 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/Rsamtools_1.20.4.tar.gz</package>
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24 </action>
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25 </actions>
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26 </install>
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27 <readme>
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28 Differential exon usage based on the negative binomial distribution.
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29 </readme>
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30 </package>
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31 </tool_dependency>
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