Mercurial > repos > pavanvidem > blockbuster

view tool_dependencies.xml @ 9:7f772745b7df draft

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author pavanvidem
date Mon, 19 Aug 2013 10:47:57 -0400
parents 8d64dc0b86ad
children 1a862304dea6
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<?xml version="1.0"?>
<tool_dependency>
    <package name="blockbuster" version="1.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://www.bioinf.uni-leipzig.de/~david/LIFE/blockbuster.tar.gz</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>blockbuster.x</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
	
        </readme>
    </package>
    <package name="BEDTools" version="1.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>bin/bamToBed</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
	
        </readme>
    </package>
</tool_dependency>